EVA-3660: Script to detect and update variants in variant warehouse that need normalisation #180
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Still working on tests, otherwise this can be looked at |
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Remaining tasks:
Guide for reviewers:
RemediationApplication- main remediation script, borrows heavily from EVA-3667 for merge strategy but differs in the need to split documentsVariantStatsProcessor- copied verbatim from EVA-3667, don't need to review thisNormalisationProcessor- implementation of normalisation algorithmContigRenamingProcessor- small class to rename contigs using assembly report