v1.10.2

Preparation

• Fix how the species name in Ensembl is resolved within the VEP cache

v1.10.1

Ingestion

• default clustering instance to 6
• Bugfixes for accession load

v1.10.0

Validation

• Prepare reference genome to allow normlaisation to happen without error

Brokering

• Add population and imputation to BioSamples when available

Ingestion

• Load Submitted variant accession to the variant warehouse during variant load
• Add remapping, clustering and backpropagation steps
• skip remapping, clustering and backpropagation when target assembly is from a different taxonomy

v1.9.0

Validation

• Separate structural variation check in the Nextflow

Brokering

• Generate archival confirmation text after brokering

Ingestion

• Fix to QC report

v1.8.0

Validation

• Add normalisation step during validation. The file used after that will be the normalised file.

Brokering

• Fix brokering to existing project (use ELOAD as project alias)

Ingestion

• New validation script that checks verify all ingestion steps have been successful and the data appear where it should.

Other

• New script to add a taxonomy/assembly to the metadata ()

v1.7.0

Validation

• Detect VCFs with structural variants

Backlog preparation

• Create CSI index files

v1.6.3

Brokering

• Upload FTP to ENA FTP is resumable and retryable.
• New option for dryrun for ENA upload
• Fix metadata read:
  • Support for Analysis list in Sample Sheet
  • Serialise dates when uploading to BioSamples

v1.6.2

Brokering

• Hot fix for update to BioSample during brokering

v1.6.1

Preparation

• Update the Contig alias while downloading a new genome

Brokering

• Use the curation object to update any BioSamples
• Add EVA Study link URL to all BioSamples created

v1.6.0

• Write the configuration file explicitly via the context manager

Brokering

• Make BioSamples brokering more robust
• Allow submission to ENA via asynchronous endpoint