v1.14.1

Brokering

• Fix submission to existing project accession (see PR177)
• New script to Insert a publication in EVAPRO (see PR180)

Ingestion

• Change the default ingestion instance to 2 (see PR182)

v1.13

Validation

• Fix unique analysis usage in Prepare submission and ENA brokering
• Flag for normalisation to warn on reference check issues rather than fail
• Fix validation of date in metadata
• Update the reference assembly in the metadata spreadsheet before brokering

Brokering

• Fix link retrieval from upload single file to ENA
• Hack to remove the null values in external reference

v1.12

Test

• Add missing metadata files and process

Validation

• Make project and analysis alias unique by prepending the ELOAD number

Brokering

• Remove spaces between novel attributes
• Improve formatting of archival text
• Brokering results overwrite previous one.

Ingestion

• Disable check for presence of extra file in the 30_valid dir
• Check that the project exists in EVAPRO before loading from ENA only load the analysis if it does
• Fix to QC stating that FTP files are missing

v1.11

Validation

• Remove normalisation

Brokering

• Run normalisation in prepare brokering

Ingestion

• Move log directory for remapping and clustering from 53_clustering to 00_logs

v1.10.8

• New script to retrieve archived ELOAD from LTS
• Fix bug qc_submission.py

v1.10.7

Test

Add docker image to represent eva-submission run environment for testing

Validation

Enforce the presence of sample collection data and geographic location

Brokering

Add default geolocation and collection dates if missing

v1.10.6

Java pipeline processes

• accept multiple mongos hosts in connection strings (see EVA-3253)

v1.10.5

Ingestion

• fix accession import log file name (see EVA-3243)

v1.10.4

• Use Spring properties generator to generate application properties for the various Java pipelines (see EVA-3147)
• Determine remapping target assembly for a submission (see EVA-3208)

v1.10.3

Ingestion

• Fix nextflow process for creation of properties file