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v1.15
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@tcezard tcezard released this 15 Jan 22:35
· 70 commits to master since this release
v1.15
1c7a4b8

Preparation

  • Create a dummy assembly report when none exists for sequences

Validation

  • Validate existing BioSamples

Brokering

  • Allow the Link label to be the link if no label is provided
  • New script to update Biosamples
  • Pass single sequence accession to ENA

Ingestion

  • Split variant load
  • During variant remapping extract VCF file with taxonomy id
  • Normalise VCF before accessioning/variant load
  • Merge accessioning and variant load in a single nextflow workflow
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