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Can I use RepeatMasker's own libraries for masking first and then use RepeatModeler for masking #299

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Windyxia11 opened this issue Dec 10, 2024 · 1 comment
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@Windyxia11
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What do you want to know?
I want to kenow when using RepeatMasker for genomic softmasking, can I use RepeatMasker's own libraries for masking first and then use RepeatModeler for masking?
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  • Is there a particular genome assembly or organism your question is about? If possible, please provide a link to a publicly available assembly and/or a species name.

  • Have you installed RepBase RepeatMasker Edition for RepeatMasker?

@rmhubley
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Sure. You would do this in two runs, first with "-species ..." and the second on the *.masked file (preferably renamed) with "-lib ...".

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