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@Dfam-consortium

Dfam Consortium

Resources for the Study of Transposable Element Families

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  1. RepeatMasker RepeatMasker Public

    RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

    Perl 235 50

  2. RepeatModeler RepeatModeler Public

    De-Novo Repeat Discovery Tool

    Perl 196 22

  3. TETools TETools Public

    Dfam Transposable Element Tools Docker container.

    Perl 86 17

  4. FamDB FamDB Public

    FamDB file format library and utilities

    Python 18 1

  5. RepeatMasker_Nextflow RepeatMasker_Nextflow Public

    Nextflow script for running RepeatMasker on a cluster

    Perl 5

  6. AlignmentSummaryViewer AlignmentSummaryViewer Public

    Multiple sequence alignment visualization component

    HTML 4

Repositories

Showing 10 of 18 repositories
  • DisCoord Public

    A tool for validating and fixing sequence coordinates in FASTA or Stockholm files

    Dfam-consortium/DisCoord’s past year of commit activity
    Rust 0 0 0 0 Updated Dec 18, 2024
  • Dfam-API Public

    Dfam API server

    Dfam-consortium/Dfam-API’s past year of commit activity
    JavaScript 1 CC0-1.0 0 1 0 Updated Dec 18, 2024
  • Dfam-Portal Public

    Angular website for Dfam resource

    Dfam-consortium/Dfam-Portal’s past year of commit activity
    TypeScript 1 CC0-1.0 1 1 0 Updated Dec 12, 2024
  • AlignmentSummaryViewer Public

    Multiple sequence alignment visualization component

    Dfam-consortium/AlignmentSummaryViewer’s past year of commit activity
    HTML 4 0 0 0 Updated Dec 12, 2024
  • FamDB Public

    FamDB file format library and utilities

    Dfam-consortium/FamDB’s past year of commit activity
    Python 18 1 0 0 Updated Dec 11, 2024
  • Smitten Public

    A format for sequence identifiers and reference parsing implementations

    Dfam-consortium/Smitten’s past year of commit activity
    Perl 0 CC0-1.0 0 0 0 Updated Dec 6, 2024
  • RepeatMasker_Nextflow Public

    Nextflow script for running RepeatMasker on a cluster

    Dfam-consortium/RepeatMasker_Nextflow’s past year of commit activity
    Perl 5 0 3 0 Updated Dec 6, 2024
  • TETools Public

    Dfam Transposable Element Tools Docker container.

    Dfam-consortium/TETools’s past year of commit activity
    Perl 86 CC0-1.0 17 1 0 Updated Nov 26, 2024
  • RepeatScout Public

    An algorithm for the de novo identification of repeat families.

    Dfam-consortium/RepeatScout’s past year of commit activity
    C 0 CC0-1.0 0 0 0 Updated Nov 26, 2024
  • RepeatModeler Public

    De-Novo Repeat Discovery Tool

    Dfam-consortium/RepeatModeler’s past year of commit activity
    Perl 196 22 105 1 Updated Nov 26, 2024
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