Updated doxygen config

doxygen/config

@@ -1,4 +1,4 @@
-# Doxyfile 1.8.14
+# Doxyfile 1.8.16
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
@@ -17,10 +17,10 @@
 # Project related configuration options
 #---------------------------------------------------------------------------
 
-# This tag specifies the encoding used for all characters in the config file
-# that follow. The default is UTF-8 which is also the encoding used for all text
-# before the first occurrence of this tag. Doxygen uses libiconv (or the iconv
-# built into libc) for the transcoding. See
+# This tag specifies the encoding used for all characters in the configuration
+# file that follow. The default is UTF-8 which is also the encoding used for all
+# text before the first occurrence of this tag. Doxygen uses libiconv (or the
+# iconv built into libc) for the transcoding. See
 # https://www.gnu.org/software/libiconv/ for the list of possible encodings.
 # The default value is: UTF-8.
 
@@ -93,6 +93,14 @@ ALLOW_UNICODE_NAMES    = NO
 
 OUTPUT_LANGUAGE        = English
 
+# The OUTPUT_TEXT_DIRECTION tag is used to specify the direction in which all
+# documentation generated by doxygen is written. Doxygen will use this
+# information to generate all generated output in the proper direction.
+# Possible values are: None, LTR, RTL and Context.
+# The default value is: None.
+
+OUTPUT_TEXT_DIRECTION  = None
+
 # If the BRIEF_MEMBER_DESC tag is set to YES, doxygen will include brief member
 # descriptions after the members that are listed in the file and class
 # documentation (similar to Javadoc). Set to NO to disable this.
@@ -189,6 +197,16 @@ SHORT_NAMES            = NO
 
 JAVADOC_AUTOBRIEF      = YES
 
+# If the JAVADOC_BANNER tag is set to YES then doxygen will interpret a line
+# such as
+# /***************
+# as being the beginning of a Javadoc-style comment "banner". If set to NO, the
+# Javadoc-style will behave just like regular comments and it will not be
+# interpreted by doxygen.
+# The default value is: NO.
+
+JAVADOC_BANNER         = NO
+
 # If the QT_AUTOBRIEF tag is set to YES then doxygen will interpret the first
 # line (until the first dot) of a Qt-style comment as the brief description. If
 # set to NO, the Qt-style will behave just like regular Qt-style comments (thus
@@ -236,7 +254,12 @@ TAB_SIZE               = 4
 # will allow you to put the command \sideeffect (or @sideeffect) in the
 # documentation, which will result in a user-defined paragraph with heading
 # "Side Effects:". You can put \n's in the value part of an alias to insert
-# newlines.
+# newlines (in the resulting output). You can put ^^ in the value part of an
+# alias to insert a newline as if a physical newline was in the original file.
+# When you need a literal { or } or , in the value part of an alias you have to
+# escape them by means of a backslash (\), this can lead to conflicts with the
+# commands \{ and \} for these it is advised to use the version @{ and @} or use
+# a double escape (\\{ and \\})
 
 ALIASES                =
 
@@ -287,12 +310,13 @@ OPTIMIZE_OUTPUT_SLICE  = YES
 # extension. Doxygen has a built-in mapping, but you can override or extend it
 # using this tag. The format is ext=language, where ext is a file extension, and
 # language is one of the parsers supported by doxygen: IDL, Java, Javascript,
-# C#, C, C++, D, PHP, Objective-C, Python, Slice, Fortran (fixed format Fortran:
-# FortranFixed, free formatted Fortran: FortranFree, unknown formatted Fortran:
-# Fortran. In the later case the parser tries to guess whether the code is fixed
-# or free formatted code, this is the default for Fortran type files), VHDL. For
-# instance to make doxygen treat .inc files as Fortran files (default is PHP),
-# and .f files as C (default is Fortran), use: inc=Fortran f=C.
+# Csharp (C#), C, C++, D, PHP, md (Markdown), Objective-C, Python, Slice,
+# Fortran (fixed format Fortran: FortranFixed, free formatted Fortran:
+# FortranFree, unknown formatted Fortran: Fortran. In the later case the parser
+# tries to guess whether the code is fixed or free formatted code, this is the
+# default for Fortran type files), VHDL, tcl. For instance to make doxygen treat
+# .inc files as Fortran files (default is PHP), and .f files as C (default is
+# Fortran), use: inc=Fortran f=C.
 #
 # Note: For files without extension you can use no_extension as a placeholder.
 #
@@ -303,7 +327,7 @@ EXTENSION_MAPPING      =
 
 # If the MARKDOWN_SUPPORT tag is enabled then doxygen pre-processes all comments
 # according to the Markdown format, which allows for more readable
-# documentation. See http://daringfireball.net/projects/markdown/ for details.
+# documentation. See https://daringfireball.net/projects/markdown/ for details.
 # The output of markdown processing is further processed by doxygen, so you can
 # mix doxygen, HTML, and XML commands with Markdown formatting. Disable only in
 # case of backward compatibilities issues.
@@ -315,7 +339,7 @@ MARKDOWN_SUPPORT       = NO
 # to that level are automatically included in the table of contents, even if
 # they do not have an id attribute.
 # Note: This feature currently applies only to Markdown headings.
-# Minimum value: 0, maximum value: 99, default value: 0.
+# Minimum value: 0, maximum value: 99, default value: 5.
 # This tag requires that the tag MARKDOWN_SUPPORT is set to YES.
 
 TOC_INCLUDE_HEADINGS   = 0
@@ -451,6 +475,12 @@ EXTRACT_ALL            = YES
 
 EXTRACT_PRIVATE        = NO
 
+# If the EXTRACT_PRIV_VIRTUAL tag is set to YES, documented private virtual
+# methods of a class will be included in the documentation.
+# The default value is: NO.
+
+EXTRACT_PRIV_VIRTUAL   = NO
+
 # If the EXTRACT_PACKAGE tag is set to YES, all members with package or internal
 # scope will be included in the documentation.
 # The default value is: NO.
@@ -529,7 +559,7 @@ INTERNAL_DOCS          = NO
 # names in lower-case letters. If set to YES, upper-case letters are also
 # allowed. This is useful if you have classes or files whose names only differ
 # in case and if your file system supports case sensitive file names. Windows
-# and Mac users are advised to set this option to NO.
+# (including Cygwin) ands Mac users are advised to set this option to NO.
 # The default value is: system dependent.
 
 CASE_SENSE_NAMES       = YES
@@ -761,7 +791,8 @@ WARN_IF_DOC_ERROR      = YES
 # This WARN_NO_PARAMDOC option can be enabled to get warnings for functions that
 # are documented, but have no documentation for their parameters or return
 # value. If set to NO, doxygen will only warn about wrong or incomplete
-# parameter documentation, but not about the absence of documentation.
+# parameter documentation, but not about the absence of documentation. If
+# EXTRACT_ALL is set to YES then this flag will automatically be disabled.
 # The default value is: NO.
 
 WARN_NO_PARAMDOC       = NO
@@ -798,7 +829,8 @@ WARN_LOGFILE           =
 # spaces. See also FILE_PATTERNS and EXTENSION_MAPPING
 # Note: If this tag is empty the current directory is searched.
 
-INPUT                  = ../slice mainpage.md
+INPUT                  = ../slice \
+                         mainpage.md
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
@@ -1020,7 +1052,7 @@ INLINE_SOURCES         = NO
 STRIP_CODE_COMMENTS    = YES
 
 # If the REFERENCED_BY_RELATION tag is set to YES then for each documented
-# function all documented functions referencing it will be listed.
+# entity all documented functions referencing it will be listed.
 # The default value is: NO.
 
 REFERENCED_BY_RELATION = NO
@@ -1057,7 +1089,7 @@ SOURCE_TOOLTIPS        = YES
 #
 # To use it do the following:
 # - Install the latest version of global
-# - Enable SOURCE_BROWSER and USE_HTAGS in the config file
+# - Enable SOURCE_BROWSER and USE_HTAGS in the configuration file
 # - Make sure the INPUT points to the root of the source tree
 # - Run doxygen as normal
 #
@@ -1267,13 +1299,13 @@ HTML_INDEX_NUM_ENTRIES = 100
 
 # If the GENERATE_DOCSET tag is set to YES, additional index files will be
 # generated that can be used as input for Apple's Xcode 3 integrated development
-# environment (see: https://developer.apple.com/tools/xcode/), introduced with
-# OSX 10.5 (Leopard). To create a documentation set, doxygen will generate a
+# environment (see: https://developer.apple.com/xcode/), introduced with OSX
+# 10.5 (Leopard). To create a documentation set, doxygen will generate a
 # Makefile in the HTML output directory. Running make will produce the docset in
 # that directory and running make install will install the docset in
 # ~/Library/Developer/Shared/Documentation/DocSets so that Xcode will find it at
-# startup. See https://developer.apple.com/tools/creatingdocsetswithdoxygen.html
-# for more information.
+# startup. See https://developer.apple.com/library/archive/featuredarticles/Doxy
+# genXcode/_index.html for more information.
 # The default value is: NO.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
@@ -1312,7 +1344,7 @@ DOCSET_PUBLISHER_NAME  = Publisher
 # If the GENERATE_HTMLHELP tag is set to YES then doxygen generates three
 # additional HTML index files: index.hhp, index.hhc, and index.hhk. The
 # index.hhp is a project file that can be read by Microsoft's HTML Help Workshop
-# (see: http://www.microsoft.com/en-us/download/details.aspx?id=21138) on
+# (see: https://www.microsoft.com/en-us/download/details.aspx?id=21138) on
 # Windows.
 #
 # The HTML Help Workshop contains a compiler that can convert all HTML output
@@ -1388,37 +1420,40 @@ QCH_FILE               =
 
 # The QHP_NAMESPACE tag specifies the namespace to use when generating Qt Help
 # Project output. For more information please see Qt Help Project / Namespace
-# (see: http://doc.qt.io/qt-4.8/qthelpproject.html#namespace).
+# (see: https://doc.qt.io/archives/qt-4.8/qthelpproject.html#namespace).
 # The default value is: org.doxygen.Project.
 # This tag requires that the tag GENERATE_QHP is set to YES.
 
 QHP_NAMESPACE          = org.doxygen.Project
 
 # The QHP_VIRTUAL_FOLDER tag specifies the namespace to use when generating Qt
 # Help Project output. For more information please see Qt Help Project / Virtual
-# Folders (see: http://doc.qt.io/qt-4.8/qthelpproject.html#virtual-folders).
+# Folders (see: https://doc.qt.io/archives/qt-4.8/qthelpproject.html#virtual-
+# folders).
 # The default value is: doc.
 # This tag requires that the tag GENERATE_QHP is set to YES.
 
 QHP_VIRTUAL_FOLDER     = doc
 
 # If the QHP_CUST_FILTER_NAME tag is set, it specifies the name of a custom
 # filter to add. For more information please see Qt Help Project / Custom
-# Filters (see: http://doc.qt.io/qt-4.8/qthelpproject.html#custom-filters).
+# Filters (see: https://doc.qt.io/archives/qt-4.8/qthelpproject.html#custom-
+# filters).
 # This tag requires that the tag GENERATE_QHP is set to YES.
 
 QHP_CUST_FILTER_NAME   =
 
 # The QHP_CUST_FILTER_ATTRS tag specifies the list of the attributes of the
 # custom filter to add. For more information please see Qt Help Project / Custom
-# Filters (see: http://doc.qt.io/qt-4.8/qthelpproject.html#custom-filters).
+# Filters (see: https://doc.qt.io/archives/qt-4.8/qthelpproject.html#custom-
+# filters).
 # This tag requires that the tag GENERATE_QHP is set to YES.
 
 QHP_CUST_FILTER_ATTRS  =
 
 # The QHP_SECT_FILTER_ATTRS tag specifies the list of the attributes this
 # project's filter section matches. Qt Help Project / Filter Attributes (see:
-# http://doc.qt.io/qt-4.8/qthelpproject.html#filter-attributes).
+# https://doc.qt.io/archives/qt-4.8/qthelpproject.html#filter-attributes).
 # This tag requires that the tag GENERATE_QHP is set to YES.
 
 QHP_SECT_FILTER_ATTRS  =
@@ -1551,7 +1586,7 @@ MATHJAX_FORMAT         = HTML-CSS
 # Content Delivery Network so you can quickly see the result without installing
 # MathJax. However, it is strongly recommended to install a local copy of
 # MathJax from https://www.mathjax.org before deployment.
-# The default value is: https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/.
+# The default value is: https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/.
 # This tag requires that the tag USE_MATHJAX is set to YES.
 
 MATHJAX_RELPATH        = https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/
@@ -1677,21 +1712,35 @@ LATEX_OUTPUT           = latex
 # The LATEX_CMD_NAME tag can be used to specify the LaTeX command name to be
 # invoked.
 #
-# Note that when enabling USE_PDFLATEX this option is only used for generating
-# bitmaps for formulas in the HTML output, but not in the Makefile that is
-# written to the output directory.
-# The default file is: latex.
+# Note that when not enabling USE_PDFLATEX the default is latex when enabling
+# USE_PDFLATEX the default is pdflatex and when in the later case latex is
+# chosen this is overwritten by pdflatex. For specific output languages the
+# default can have been set differently, this depends on the implementation of
+# the output language.
 # This tag requires that the tag GENERATE_LATEX is set to YES.
 
 LATEX_CMD_NAME         = latex
 
 # The MAKEINDEX_CMD_NAME tag can be used to specify the command name to generate
 # index for LaTeX.
+# Note: This tag is used in the Makefile / make.bat.
+# See also: LATEX_MAKEINDEX_CMD for the part in the generated output file
+# (.tex).
 # The default file is: makeindex.
 # This tag requires that the tag GENERATE_LATEX is set to YES.
 
 MAKEINDEX_CMD_NAME     = makeindex
 
+# The LATEX_MAKEINDEX_CMD tag can be used to specify the command name to
+# generate index for LaTeX. In case there is no backslash (\) as first character
+# it will be automatically added in the LaTeX code.
+# Note: This tag is used in the generated output file (.tex).
+# See also: MAKEINDEX_CMD_NAME for the part in the Makefile / make.bat.
+# The default value is: makeindex.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+LATEX_MAKEINDEX_CMD    = makeindex
+
 # If the COMPACT_LATEX tag is set to YES, doxygen generates more compact LaTeX
 # documents. This may be useful for small projects and may help to save some
 # trees in general.
@@ -1826,6 +1875,14 @@ LATEX_BIB_STYLE        = plain
 
 LATEX_TIMESTAMP        = NO
 
+# The LATEX_EMOJI_DIRECTORY tag is used to specify the (relative or absolute)
+# path from which the emoji images will be read. If a relative path is entered,
+# it will be relative to the LATEX_OUTPUT directory. If left blank the
+# LATEX_OUTPUT directory will be used.
+# This tag requires that the tag GENERATE_LATEX is set to YES.
+
+LATEX_EMOJI_DIRECTORY  =
+
 #---------------------------------------------------------------------------
 # Configuration options related to the RTF output
 #---------------------------------------------------------------------------
@@ -1865,9 +1922,9 @@ COMPACT_RTF            = NO
 
 RTF_HYPERLINKS         = NO
 
-# Load stylesheet definitions from file. Syntax is similar to doxygen's config
-# file, i.e. a series of assignments. You only have to provide replacements,
-# missing definitions are set to their default value.
+# Load stylesheet definitions from file. Syntax is similar to doxygen's
+# configuration file, i.e. a series of assignments. You only have to provide
+# replacements, missing definitions are set to their default value.
 #
 # See also section "Doxygen usage" for information on how to generate the
 # default style sheet that doxygen normally uses.
@@ -1876,8 +1933,8 @@ RTF_HYPERLINKS         = NO
 RTF_STYLESHEET_FILE    =
 
 # Set optional variables used in the generation of an RTF document. Syntax is
-# similar to doxygen's config file. A template extensions file can be generated
-# using doxygen -e rtf extensionFile.
+# similar to doxygen's configuration file. A template extensions file can be
+# generated using doxygen -e rtf extensionFile.
 # This tag requires that the tag GENERATE_RTF is set to YES.
 
 RTF_EXTENSIONS_FILE    =
@@ -1963,6 +2020,13 @@ XML_OUTPUT             = xml
 
 XML_PROGRAMLISTING     = YES
 
+# If the XML_NS_MEMB_FILE_SCOPE tag is set to YES, doxygen will include
+# namespace members in file scope as well, matching the HTML output.
+# The default value is: NO.
+# This tag requires that the tag GENERATE_XML is set to YES.
+
+XML_NS_MEMB_FILE_SCOPE = NO
+
 #---------------------------------------------------------------------------
 # Configuration options related to the DOCBOOK output
 #---------------------------------------------------------------------------
@@ -2079,7 +2143,8 @@ SEARCH_INCLUDES        = YES
 # preprocessor.
 # This tag requires that the tag SEARCH_INCLUDES is set to YES.
 
-INCLUDE_PATH           = ../slice/ ../ice/slice/
+INCLUDE_PATH           = ../slice/ \
+                         ../ice/slice/
 
 # You can use the INCLUDE_FILE_PATTERNS tag to specify one or more wildcard
 # patterns (like *.h and *.hpp) to filter out the header-files in the
@@ -2164,12 +2229,6 @@ EXTERNAL_GROUPS        = YES
 
 EXTERNAL_PAGES         = YES
 
-# The PERL_PATH should be the absolute path and name of the perl script
-# interpreter (i.e. the result of 'which perl').
-# The default file (with absolute path) is: /usr/bin/perl.
-
-PERL_PATH              = /usr/bin/perl
-
 #---------------------------------------------------------------------------
 # Configuration options related to the dot tool
 #---------------------------------------------------------------------------
@@ -2183,15 +2242,6 @@ PERL_PATH              = /usr/bin/perl
 
 CLASS_DIAGRAMS         = YES
 
-# You can define message sequence charts within doxygen comments using the \msc
-# command. Doxygen will then run the mscgen tool (see:
-# http://www.mcternan.me.uk/mscgen/)) to produce the chart and insert it in the
-# documentation. The MSCGEN_PATH tag allows you to specify the directory where
-# the mscgen tool resides. If left empty the tool is assumed to be found in the
-# default search path.
-
-MSCGEN_PATH            =
-
 # You can include diagrams made with dia in doxygen documentation. Doxygen will
 # then run dia to produce the diagram and insert it in the documentation. The
 # DIA_PATH tag allows you to specify the directory where the dia binary resides.