V3.7.0

TODO: Add full changelog

3.6.0

Hotfix to master (#261)

* added moving parameters generator module

* added doc to functions

* replace file path join method

* Added option to run with exported matrix and population.
Added option to specify output csv path.
Moved corona_hakab_model_data to same directory, to enable running from CMD easily.
Added option to specify random seed, for easier reproducibility.

* Split main.py to generate and simulate functions.
Matrix/population exporting is called explicitly, instead of inside __init__
Can specify location to save image, simulation csv.
Moved ...data folder back to normal place, with batch file (by Ben) to help support CMD usage. Updated readme accordingly.

* And now with slightly better documentation

* added documentation in the README file

* added explanation how to run the module in the documentation

* Add output directory to gitignore

* added example parameters to run the generator

* initial commit

* older adults too

* Removed duplicate call to fill_population_data

* Added option to run both generation and simulation with a single call to main.py
Updated doc accordingly.
MatrixData only adds matrix type if not already there.

* added export of the first sick patients to a csv file

* Feature/run generation from folders (#190)

Added utils for master folder generation,
moved generation command logic to seperate function
for the 'generate from folder' features to work there must be a universal export from GenerationManager

* issue - 165 output analisys plot max min chart bar

* added circle id's

* copied new lines from build_win.py

* Detections extended (#180)

* * max tests per lambda
* multiple testing locations
* each test lambda holds the number of test executed
* example on test given prev test result

* add annotation from future

* refactor

* conflicts resolve

* Pipfile + Pipfile.lock updated with pandas dependency
README.md - added instructions for running under Debian Linux

* initial commit

* added important doc

* added api to moving parameters generator

* added README documentation of api to moving parameters generator

* rename moving parameters example file

* Added vm_install script for installing everything on an Ubuntu VM.
Added documentation for it in the README.md

* teachers and students amount not hardcoded

* Feature/collect infection rate (#169)

* started writing the post process supervisor

* SupervisblesLambda is working

* Working now

* Fixes after pull from dev

* added Linux scripts

* move old things to the junkyard

* initial Dockerfile added

* .

* setup.py - is not useful currently

* Docker image works (well, we still need to fix qt stuff)

* rename vm_install.sh

* Revert "setup.py - is not useful currently"

This reverts commit 6e64229a

* issues - 164,166,204 (#210)

* issues - 164,166,204

204 - analyzer example script
166, 164 - aggregation of multiple simulation

* issues - 164,166,204

fixes after PR

* issues - 164,166,204

another minor fixes after PR

* added sick agents export at the end of the simulation run

* added social circle index, added social circle index to sick agents export

* Analyzers documentation (#223)

* Analyzers documentation


Co-authored-by: Shemesh <[email protected]>

* added output path of sick agents export to simulation args

* changed social circle index to guid

* added time-based histograms to supervisor.py

* population_analysis.py cleanup and docs (#219)

* population_analysis.py updated to be configurable with arguments, added docs

* Using project_structure for output path

Co-authored-by: Shemesh <[email protected]>
Co-authored-by: mor-m-shemesh <[email protected]>

* changed jsons to Jsons in README file

* some docs and CR fixes

* Fixed paths to lead to actual repo folder (#231)

* fixed bug

* fixed bug that teachers had both work and school connections

* fixes

* fixes

* This is hotfix. We have similiar branch that was merged to dev4.0, but we want this also on develop (for milestone 3.5) (#235)

* adding a check (#236)

* fixing some issues

* review changes

* Parasymbolic total test (#248)

* added test

* fixed

Co-authored-by: tal nc <[email protected]>
Co-authored-by: ben avrahami <[email protected]>

* removed unnecessary import

* This is hotfix. We created a function to get the default args parser (#243)

* This is hotfix. We created a function to get the default args parser

* Moved the argparser to modules_argpasers.py

* Documentation and returns the default args

* added support for conditions on initial sick agents

* Fixed issues from code review

* self isolation after positive detection

* self isolation after positive detection

* .

* added some documentation and started removing old id

* real teacher creation

* fixed bug in agent adulthood check

* .

* __data__ moved to corona_hakab_model_data. for now a having a separate data module just makes things more complicated

* Docker image works!

* bugfixes!

* .

* Dockerfile - change default branch

* Feature/update medical state machine (#255)

* Updated medical state machine, missing days distributions for latent-presymp shenanigans

* wip

* rounded distributions so probs sum to 1

* Converted discrete distributions to dist() approximations

* Organized actual data in comments to avoid linter highlights

* Fixed asymptotic transfer, removed unneeded infection chances

* Hotfix/devision by zero no students (#258)

* fixed devision by zero

* fixed bug in new teacher count

* Fixed asymp-presymp mixup (#260)

Co-authored-by: RoyIsland <[email protected]>
Co-authored-by: Assaf Mushkin <[email protected]>
Co-authored-by: Ben Lewis <[email protected]>
Co-authored-by: rlfreiman <[email protected]>
Co-authored-by: aviv simchony <[email protected]>
Co-authored-by: mor-m-shemesh <[email protected]>
Co-authored-by: omri312 <[email protected]>
Co-authored-by: noam <[email protected]>
Co-authored-by: mishana <[email protected]>
Co-authored-by: Michael Ehrlich <[email protected]>
Co-authored-by: Idan Miara <[email protected]>
Co-authored-by: NoamShapira <[email protected]>
Co-authored-by: Shemesh <[email protected]>
Co-authored-by: AmitGru <[email protected]>
Co-authored-by: AmitGru <[email protected]>
Co-authored-by: bgmoshe <[email protected]>
Co-authored-by: Ben Avrahami <[email protected]>
Co-authored-by: tal nc <[email protected]>
Co-authored-by: ben avrahami <[email protected]>
Co-authored-by: מיכאל <[email protected]>
Co-authored-by: avivsimchony <[email protected]>
Co-authored-by: rlfreiman <[email protected]>