Feature/issue 182 calculate r effective #263
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… project_structure.py.
…fective' into feature/issue-182-calculate-r-effective
…un of the simulation for number of steps and extract growth_rates and new_sick_everyday * Parameter initialization for calculate_r_effective
…json configuration. Added path to analyzers folder
…ctor when reseting.
…' of https://github.com/CoronaHakab/CoronaHakabModel into feature/issue-182-calculate-r-effective � Conflicts: � src/corona_hakab_model/analyzers/example_script.py � src/corona_hakab_model/analyzers/tests/test_simulation_analysis.py � src/corona_hakab_model/project_structure.py
…atrix_manager could be None
*) Fixed small bug in mc of state times where the time untill recovered/deceased was calculated wrong *) Dataframe was by accident only 2 rows - fixed this and optimized running time with constant size DataFrame
…r_effective calculation: *) Simple - takes into account the mc calculation, but only takes two days *) Weighted - Fixes number of diseases days and weights the days since infections
…' of https://github.com/CoronaHakab/CoronaHakabModel into feature/issue-182-calculate-r-effective � Conflicts: � src/corona_hakab_model/main.py � src/corona_hakab_model/manager.py � src/corona_hakab_model/project_structure.py � src/corona_hakab_model/subconsts/modules_argpasers.py � src/corona_hakab_model/supervisor.py � src/corona_hakab_model/update_matrix.py
…' of https://github.com/CoronaHakab/CoronaHakabModel into feature/issue-182-calculate-r-effective � Conflicts: � src/corona_hakab_model/main.py � src/corona_hakab_model/manager.py � src/corona_hakab_model/subconsts/modules_argpasers.py � src/corona_hakab_model/update_matrix.py
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@meirhalachmi Should I clsoe this? Also, I add some good ideas about how to speed this baby up using python's multi-process. |
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@bgmoshe Is this still relevant? |
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R effective calculation code. This is for sharing ad discussing with @meirhalachmi , not final code