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1. blab/size-genetic-clusters blab/size-genetic-clusters Public

   Code and data for "Estimating the reproduction number and transmission heterogeneity from the size distribution of clusters of identical pathogen sequences"

   R 6 1

2. blab/phylo-kernel-public blab/phylo-kernel-public Public

   Code and data for: "Fine-scale patterns of SARS-CoV-2 spread from identical pathogen sequences".

   R

3. tutorial-rr-identical-sequences tutorial-rr-identical-sequences Public

   Tutorial on how to compute the relative risk of observing identical sequences for large sequence datasets

   R