This repository has been archived by the owner on Oct 23, 2023. It is now read-only.
Bump rojopolis/spellcheck-github-actions from 0.33.1 to 0.34.0 #602
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Integration Tests | |
| on: | |
| pull_request: | |
| jobs: | |
| build: | |
| strategy: | |
| max-parallel: 4 | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.10"] | |
| runs-on: ${{ matrix.os }} | |
| name: Integration Tests | |
| services: | |
| registry: | |
| image: registry:2 | |
| ports: | |
| - 5000:5000 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install requirements | |
| run: | | |
| pip install aiohttp | |
| pip install requests | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| with: | |
| driver-opts: network=host | |
| - name: Build | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: . | |
| push: true | |
| file: ./Dockerfile | |
| tags: localhost:5000/beacon-python:latest | |
| cache-from: localhost:5000/beacon-python:latest | |
| cache-to: type=local,dest=/tmp/.buildx-cache | |
| - name: Start Services | |
| run: | | |
| docker-compose -f deploy/test/docker-compose.yml up -d | |
| sleep 10 | |
| docker exec test_beacon_1 beacon_init /exdata/ALL.chrMT.phase3_callmom-v0_4.20130502.genotypes.vcf.gz /exdata/example_metadata.json | |
| docker exec test_beacon_1 beacon_init /exdata/ALL.chrMT.phase3_callmom-v0_4.20130502.genotypes.vcf.gz /exdata/example_metadata_registered.json | |
| docker exec test_beacon_1 beacon_init /exdata/ALL.chrMT.phase3_callmom-v0_4.20130502.genotypes.vcf.gz /exdata/example_metadata_controlled.json | |
| docker exec test_beacon_1 beacon_init /exdata/ALL.chrMT.phase3_callmom-v0_4.20130502.genotypes.vcf.gz /exdata/example_metadata_controlled1.json | |
| - name: Run Integration test | |
| run: | | |
| python deploy/test/run_tests.py | |
| - name: Collect logs from docker | |
| if: ${{ failure() }} | |
| run: cd deploy && docker-compose logs --no-color -t > ../tests/dockerlogs || true | |
| - name: Persist log files | |
| if: ${{ failure() }} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: test_debugging_help | |
| path: tests |