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Merge main into sweep/upgrade-react-query
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@sweep-ai
sweep-ai[bot] authored Dec 10, 2023
2 parents 9a0fcb1 + 7946711 commit 9b3dd75
Showing 1 changed file with 159 additions and 59 deletions.
218 changes: 159 additions & 59 deletions ...de/views/conversion/ components/submission/components/submissionForms/SubmissionForms.jsx
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Original file line number Diff line number Diff line change
Expand Up @@ -62,94 +62,194 @@ export default function SubmissionForms(props) {
}, [inputFormat]);

useEffect(() => {
// check if conversion can be started
const trueVals = Object.values(outputFormats).filter((value) => value);
if (trueVals.length === 0) {
// no output format selected
const isOutputFormatSelected = () => Object.values(outputFormats).some(value => value);

const showToast = (id, message) => {
renderToast({ id, message });
setConversionCanBeStarted(false);
};

const getFileExtension = fileName => fileName.split('.').pop();

const validateFileExtensions = (expectedExtensions, inputFormat) => {
const fileNames = Object.keys(uploadedFiles);
const fileExtensions = fileNames.map(getFileExtension);

if (inputFormat === "cdisc"
&& fileExtensions.filter(ext => ext === "xml").length !== 1
) {
showToast(
"oneXmlFileExpected",
"One xml file is expected"
);
return false;
}

if (fileNames.some(
fileName => !expectedExtensions.includes(getFileExtension(fileName))
)) {
showToast(
"unacceptedFileExtension",
"One or more files have an unacceptable file extension"
);
return false;
}
return true;
};

if (!isOutputFormatSelected()) {
setConversionCanBeStarted(false);
return;
}

if (runExampleData && trueVals.length !== 0 ) {
if (runExampleData) {
setConversionCanBeStarted(true);
return;
}

if (["redcap", "cdisc"].includes(inputFormat)) {
if (Object.keys(uploadedFiles).length < 3) {
setConversionCanBeStarted(false);
return;
}

const acceptedFileExtensionsGeneral = ["txt", "tsv", "csv", "yaml", "yml", "json"];
const acceptedFileExtensions = ["txt", "tsv", "csv", "yaml", "yml", "json"];
const inputFormatsNeedingSingleFile = ["bff", "pxf", "omop"];
const fileCount = Object.keys(uploadedFiles).length;

if (inputFormat === "cdisc") {
acceptedFileExtensionsGeneral.push("xml");
}

const fileNames = Object.keys(uploadedFiles);
const fileExtensions=[]
const filesWithUnacceptedExtensions = fileNames.filter((fileName) => {
const fileExtension = fileName.split(".").pop();
fileExtensions.push(fileExtension);
return !acceptedFileExtensionsGeneral.includes(fileExtension);
});
if (["cdisc", "redcap"].includes(inputFormat)) {
const cdiscFileExtensions = inputFormat === "cdisc"
? [...acceptedFileExtensions, "xml"]
: acceptedFileExtensions;

if (inputFormat === "cdisc") {
if (fileExtensions.filter((fileExtension) => fileExtension === "xml").length !== 1) {
renderToast({
id:"oneXmlFileExpected",
message:"One xml file is expected"
});
if (fileCount < 3) {
setConversionCanBeStarted(false);
return;
}
}

if (filesWithUnacceptedExtensions.length > 0) {
renderToast({
id:"unacceptedFileExtension",
message:"one or more files have an unacceptable file extension"
});
if (!validateFileExtensions(
cdiscFileExtensions,
inputFormat
)) return;
}

if (inputFormatsNeedingSingleFile.includes(inputFormat)) {
if (fileCount === 0) {
setConversionCanBeStarted(false);
return;
}
}

if (["bff", "pxf", "omop"].includes(inputFormat) && Object.keys(uploadedFiles).length > 1) {
renderToast({
id:"onlyOneFileExpected",
message:"Only one file is expected"
});
console.log("only one file expected");
console.log("uploadedFiles", uploadedFiles)
setConversionCanBeStarted(false);
return;
}
if (fileCount > 1) {
showToast(
"onlyOneFileExpected",
"Only one file is expected"
);
return;
}

if (["bff", "pxf", "omop"].includes(inputFormat) && Object.keys(uploadedFiles).length == 1) {
const fileName = Object.keys(uploadedFiles)[0];
if (["bff", "pxf"].includes(inputFormat) && !fileName.endsWith(".json")) {
renderToast({
id:"jsonFileExpected",
message:"Please upload a .json file"
});
setConversionCanBeStarted(false);
showToast(
"jsonFileExpected",
"Please upload a .json file"
);
return;
}

if (inputFormat == "omop" && !fileName.endsWith(".sql") && !fileName.endsWith(".gz")) {
renderToast({
id:"sqlOrGzFileExpected",
message:"Please upload a .sql or sql.gz file"
});
setConversionCanBeStarted(false);
if (inputFormat === "omop" && !fileName.endsWith(".sql") && !fileName.endsWith(".gz")) {
showToast(
"sqlOrGzFileExpected",
"Please upload a .sql or sql.gz file"
);
return;
}
}
if (filesUploadFinished) setConversionCanBeStarted(true);
setConversionCanBeStarted(filesUploadFinished);
}, [inputFormat, outputFormats, uploadedFiles, runExampleData, filesUploadFinished]);

// useEffect(() => {
// // check if conversion can be started
// const trueVals = Object.values(outputFormats).filter((value) => value);
// if (trueVals.length === 0) {
// // no output format selected
// setConversionCanBeStarted(false);
// return;
// }

// if (runExampleData && trueVals.length !== 0 ) {
// setConversionCanBeStarted(true);
// return;
// }

// if (["redcap", "cdisc"].includes(inputFormat)) {
// if (Object.keys(uploadedFiles).length < 3) {
// setConversionCanBeStarted(false);
// return;
// }

// const acceptedFileExtensionsGeneral = ["txt", "tsv", "csv", "yaml", "yml", "json"];

// if (inputFormat === "cdisc") {
// acceptedFileExtensionsGeneral.push("xml");
// }

// const fileNames = Object.keys(uploadedFiles);
// const fileExtensions=[]
// const filesWithUnacceptedExtensions = fileNames.filter((fileName) => {
// const fileExtension = fileName.split(".").pop();
// fileExtensions.push(fileExtension);
// return !acceptedFileExtensionsGeneral.includes(fileExtension);
// });

// if (inputFormat === "cdisc") {
// if (fileExtensions.filter((fileExtension) => fileExtension === "xml").length !== 1) {
// renderToast({
// id:"oneXmlFileExpected",
// message:"One xml file is expected"
// });
// setConversionCanBeStarted(false);
// return;
// }
// }

// if (filesWithUnacceptedExtensions.length > 0) {
// renderToast({
// id:"unacceptedFileExtension",
// message:"one or more files have an unacceptable file extension"
// });
// setConversionCanBeStarted(false);
// return;
// }
// }

// if (["bff", "pxf", "omop"].includes(inputFormat) && Object.keys(uploadedFiles).length > 1) {
// renderToast({
// id:"onlyOneFileExpected",
// message:"Only one file is expected"
// });
// console.log("only one file expected");
// console.log("uploadedFiles", uploadedFiles)
// setConversionCanBeStarted(false);
// return;
// }

// if (["bff", "pxf", "omop"].includes(inputFormat) && Object.keys(uploadedFiles).length == 1) {
// const fileName = Object.keys(uploadedFiles)[0];
// if (["bff", "pxf"].includes(inputFormat) && !fileName.endsWith(".json")) {
// renderToast({
// id:"jsonFileExpected",
// message:"Please upload a .json file"
// });
// setConversionCanBeStarted(false);
// return;
// }

// if (inputFormat == "omop" && !fileName.endsWith(".sql") && !fileName.endsWith(".gz")) {
// renderToast({
// id:"sqlOrGzFileExpected",
// message:"Please upload a .sql or sql.gz file"
// });
// setConversionCanBeStarted(false);
// return;
// }
// }
// if (filesUploadFinished) setConversionCanBeStarted(true);
// }, [inputFormat, outputFormats, uploadedFiles, runExampleData, filesUploadFinished]);

const handleStartConversionClicked = () => {
if (runExampleData) {
setStartFileConversion(true);
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