Allow users to handle invalid nodes coming from a search against the API

docs/faq.md

@@ -55,7 +55,7 @@ tab for developer documentation._
 
 **Q:** Is there documentation detailing the internal workings of the code?
 
-**A:** _Absolutely! For an in-depth look at the CRIPT Python SDK code, 
+**A:** _Absolutely! For an in-depth look at the CRIPT Python SDK code,
 consult the [GitHub repository wiki internal documentation](https://github.com/C-Accel-CRIPT/Python-SDK/wiki)._
 
 ---
@@ -84,7 +84,7 @@ A GitHub account is required._
 
 **Q:** Where can I find the release notes for each SDK version?
 
-**A:** _The release notes can be found on our 
+**A:** _The release notes can be found on our
 [CRIPT Python SDK repository releases section](https://github.com/C-Accel-CRIPT/Python-SDK/releases)_
 
 ---
@@ -97,6 +97,55 @@ the code is written to get a better grasp of it?
 There you will find documentation on everything from how our code is structure,
 how we aim to write our documentation, CI/CD, and more._
 
+---
+
+**Q:** What can I do, when my `api.search(...)` fails with a `cript.nodes.exception.CRIPTJsonDeserializationError` or similar?
+
+**A:** _There is a solution for you. Sometimes CRIPT can contain nodes formatted in a way that the Python SDK does not understand. We can disable the automatic conversion from the API response into SDK nodes. Here is an example of how to achieve this:
+```python
+# Create API object in with statement, here it assumes host, token, and storage token are in your environment variables
+with cript.API() as api:
+    # Find the paginator object, which is a python iterator over the search results.
+    materials_paginator = cript_api.search(node_type=cript.Material, search_mode=cript.SearchModes.NODE_TYPE)
+    # Usually you would do
+    # `materials_list = list(materials_paginator)`
+    # or
+    # for node in materials_paginator:
+    #    #do node stuff
+    # But now we want more control over the iteration to ignore failing node decoding.
+    # And store the result in a list of valid nodes
+    materials_list = []
+    # We use a while True loop to iterate over the results
+    while True:
+        # This first try catches, when we reach the end of the search results.
+	# The `next()` function raises a StopIteration exception in that case
+        try:
+	    # First we try to convert the current response into a node directly
+            try:
+                material_node = next(materials_paginator)
+	    # But if that fails, we catch the exception from CRIPT
+            except cript.CRIPTException as exc:
+                # In case of failure, we disable the auto_load_function temporarily
+                materials_paginator.auto_load_nodes = False
+		# And only obtain the unloaded node JSON instead
+                material_json = next(materials_paginator)
+		# Here you can inspect and manually handle the problem.
+		# In the example, we just print it and ignore it otherwise
+		print(exc, material_json)
+            else:
+		# After a valid node is loaded (try block didn't fail)
+		# we store the valid node in the list
+                materials_list += [material_node]
+            finally:
+	        # No matter what happened, for the next iteration we want to try to obtain
+		# an auto loaded node again, so we reset the paginator state.
+                materials_paginator.auto_load_nodes = True
+        except StopIteration:
+	    # If next() of the paginator indicates an end of the search results, break the loop
+            break
+```
+
+
 _We try to also have type hinting, comments, and docstrings for all the code that we work on so it is clear and easy for anyone reading it to easily understand._
 
 _if all else fails, contact us on our [GitHub Repository](https://github.com/C-Accel-CRIPT/Python-SDK)._

src/cript/api/api.py

@@ -988,7 +988,7 @@ def _capsule_request(self, url_path: str, method: str, api_request: bool = True,
         response: requests.Response = requests.request(url=url, method=method, headers=headers, timeout=timeout, **kwargs)
         post_log_message: str = f"Request return with {response.status_code}"
         if self.extra_api_log_debug_info:
-            post_log_message += f" {response.raw}"
+            post_log_message += f" {response.text}"
         self.logger.debug(post_log_message)
 
         return response

src/cript/api/paginator.py

@@ -1,4 +1,4 @@
-from json import JSONDecodeError
+import json
 from typing import Dict, Union
 from urllib.parse import quote
 
@@ -33,6 +33,7 @@ class Paginator:
     _current_position: int
     _fetched_nodes: list
     _number_fetched_pages: int = 0
+    auto_load_nodes: bool = True
 
     @beartype
     def __init__(
@@ -119,8 +120,11 @@ def _fetch_next_page(self) -> None:
         # if converting API response to JSON gives an error
         # then there must have been an API error, so raise the requests error
         # this is to avoid bad indirect errors and make the errors more direct for users
-        except JSONDecodeError:
-            response.raise_for_status()
+        except json.JSONDecodeError as json_exc:
+            try:
+                response.raise_for_status()
+            except Exception as exc:
+                raise exc from json_exc
 
         # handling both cases in case there is result inside of data or just data
         try:
@@ -137,8 +141,10 @@ def _fetch_next_page(self) -> None:
         if api_response["code"] != 200:
             raise APIError(api_error=str(response.json()), http_method="GET", api_url=temp_url_path)
 
-        node_list = load_nodes_from_json(current_page_results)
-        self._fetched_nodes += node_list
+        # Here we only load the JSON into the temporary results.
+        # This delays error checking, and allows users to disable auto node conversion
+        json_list = current_page_results
+        self._fetched_nodes += json_list
 
     def __next__(self):
         if self._current_position >= len(self._fetched_nodes):
@@ -147,14 +153,24 @@ def __next__(self):
                 raise StopIteration
             self._fetch_next_page()
 
-        self._current_position += 1
         try:
-            return self._fetched_nodes[self._current_position - 1]
+            next_node_json = self._fetched_nodes[self._current_position - 1]
         except IndexError:  # This is not a random access iteration.
             # So if fetching a next page wasn't enough to get the index inbound,
             # The iteration stops
             raise StopIteration
 
+        if self.auto_load_nodes:
+            return_data = load_nodes_from_json(next_node_json)
+        else:
+            return_data = next_node_json
+
+        # Advance position last, so if an exception occurs, for example when
+        # node decoding fails, we do not advance, and users can try again without decoding
+        self._current_position += 1
+
+        return return_data
+
     def __iter__(self):
         self._current_position = 0
         return self

tests/api/test_search.py

@@ -24,7 +24,22 @@ def test_api_search_node_type(cript_api: cript.API) -> None:
 
     # test search results
     assert isinstance(materials_paginator, Paginator)
-    materials_list = list(materials_paginator)
+    materials_list = []
+    while True:
+        try:
+            try:
+                material_node = next(materials_paginator)
+            except cript.CRIPTException as exc:
+                materials_paginator.auto_load_nodes = False
+                material_json = next(materials_paginator)
+                print(exc, material_json)
+            else:
+                materials_list += [material_node]
+            finally:
+                materials_paginator.auto_load_nodes = True
+        except StopIteration:
+            break
+
     # Assure that we paginated more then one page
     assert materials_paginator._current_page_number > 0
     assert len(materials_list) > 5