Temporary

src/cript/api/api.py

@@ -258,6 +258,9 @@ def _init_logger(self, log_level=logging.INFO) -> None:
 
         logger.setLevel(log_level)
 
+        # Activate Warning handling
+        logging.captureWarnings(True)
+
         # Create a console handler
         console_handler = logging.StreamHandler()
 

src/cript/exceptions.py

@@ -10,3 +10,17 @@ class CRIPTException(Exception):
     @abstractmethod
     def __str__(self) -> str:
         pass
+
+
+class CRIPTWarning(Warning):
+    """
+    Parent CRIPT warning.
+    All CRIPT warning inherit this class.
+    """
+
+    @abstractmethod
+    def __str__(self) -> str:
+        pass
+
+    def __repr__(self):
+        return str(self)

src/cript/nodes/exceptions.py

@@ -1,7 +1,7 @@
 from abc import ABC, abstractmethod
 from typing import List
 
-from cript.exceptions import CRIPTException
+from cript.exceptions import CRIPTException, CRIPTWarning
 
 
 class CRIPTUUIDException(CRIPTException):
@@ -67,7 +67,7 @@ def __str__(self) -> str:
         return error_message
 
 
-class CRIPTMaterialIdentifierError(CRIPTException):
+class CRIPTMaterialIdentifierWarning(CRIPTWarning):
     """Every material node needs to have at least one identifier set."""
 
     def __init__(self, material_node):
@@ -281,14 +281,14 @@ def __str__(self):
         )
 
 
-class CRIPTOrphanedNodesError(CRIPTException, ABC):
+class CRIPTOrphanedNodesWarning(CRIPTWarning, ABC):
     """
     ## Definition
     This error is raised when a child node is not attached to the
     appropriate parent node. For example, all material nodes used
     within a project must belong to the project inventory or are explicitly listed as material of that project.
     If there is a material node that is used within a project but not a part of the
-    inventory and the validation code finds it then it raises an `CRIPTOrphanedNodeError`
+    inventory and the validation code finds it then it raises an `CRIPTOrphanedNodeWarning`
 
     ## Troubleshooting
     Fixing this is simple and easy, just take the node that CRIPT Python SDK
@@ -307,10 +307,10 @@ def __str__(self):
         pass
 
 
-class CRIPTOrphanedMaterialError(CRIPTOrphanedNodesError):
+class CRIPTOrphanedMaterialWarning(CRIPTOrphanedNodesWarning):
     """
     ## Definition
-    CRIPTOrphanedNodesError, but specific for orphaned materials.
+    CRIPTOrphanedNodesWarning, but specific for orphaned materials.
 
     ## Troubleshooting
     Handle this error by adding the orphaned materials into the parent project or its inventories.
@@ -327,10 +327,10 @@ def __str__(self):
         return ret_string
 
 
-class CRIPTOrphanedExperimentError(CRIPTOrphanedNodesError):
+class CRIPTOrphanedExperimentWarning(CRIPTOrphanedNodesWarning):
     """
     ## Definition
-    CRIPTOrphanedNodesError, but specific for orphaned nodes that should be listed in one of the experiments.
+    CRIPTOrphanedNodesWarning, but specific for orphaned nodes that should be listed in one of the experiments.
 
     ## Troubleshooting
     Handle this error by adding the orphaned node into one the parent project's experiments.
@@ -348,10 +348,10 @@ def __str__(self) -> str:
         return ret_string
 
 
-class CRIPTOrphanedDataError(CRIPTOrphanedExperimentError):
+class CRIPTOrphanedDataWarning(CRIPTOrphanedExperimentWarning):
     """
     ## Definition
-    CRIPTOrphanedExperimentError, but specific for orphaned Data node that should be listed in one of the experiments.
+    CRIPTOrphanedExperimentWarning, but specific for orphaned Data node that should be listed in one of the experiments.
 
     ## Troubleshooting
     Handle this error by adding the orphaned node into one the parent project's experiments `data` attribute.
@@ -361,10 +361,10 @@ def __init__(self, orphaned_node):
         super().__init__(orphaned_node)
 
 
-class CRIPTOrphanedProcessError(CRIPTOrphanedExperimentError):
+class CRIPTOrphanedProcessWarning(CRIPTOrphanedExperimentWarning):
     """
     ## Definition
-    CRIPTOrphanedExperimentError, but specific for orphaned Process node that should be
+    CRIPTOrphanedExperimentWarning, but specific for orphaned Process node that should be
     listed in one of the experiments.
 
     ## Troubleshooting
@@ -376,10 +376,10 @@ def __init__(self, orphaned_node):
         super().__init__(orphaned_node)
 
 
-class CRIPTOrphanedComputationError(CRIPTOrphanedExperimentError):
+class CRIPTOrphanedComputationWarning(CRIPTOrphanedExperimentWarning):
     """
     ## Definition
-    CRIPTOrphanedExperimentError, but specific for orphaned Computation node that should be
+    CRIPTOrphanedExperimentWarning, but specific for orphaned Computation node that should be
     listed in one of the experiments.
 
     ## Troubleshooting
@@ -391,10 +391,10 @@ def __init__(self, orphaned_node):
         super().__init__(orphaned_node)
 
 
-class CRIPTOrphanedComputationalProcessError(CRIPTOrphanedExperimentError):
+class CRIPTOrphanedComputationalProcessWarning(CRIPTOrphanedExperimentWarning):
     """
     ## Definition
-    CRIPTOrphanedExperimentError, but specific for orphaned ComputationalProcess
+    CRIPTOrphanedExperimentWarning, but specific for orphaned ComputationalProcess
     node that should be listed in one of the experiments.
 
     ## Troubleshooting

src/cript/nodes/primary_nodes/material.py

@@ -1,9 +1,10 @@
+import warnings
 from dataclasses import dataclass, field, replace
 from typing import Any, List, Optional, Union
 
 from beartype import beartype
 
-from cript.nodes.exceptions import CRIPTMaterialIdentifierError
+from cript.nodes.exceptions import CRIPTMaterialIdentifierWarning
 from cript.nodes.primary_nodes.primary_base_node import PrimaryBaseNode
 from cript.nodes.primary_nodes.process import Process
 from cript.nodes.util.json import UIDProxy
@@ -218,7 +219,7 @@ def validate(self, api=None, is_patch: bool = False, force_validation: bool = Fa
             and self.smiles is None
             and self.vendor is None
         ):
-            raise CRIPTMaterialIdentifierError(self)
+            warnings.warn(CRIPTMaterialIdentifierWarning(self))
 
     @property
     @beartype

src/cript/nodes/primary_nodes/project.py

@@ -1,3 +1,4 @@
+import warnings
 from dataclasses import dataclass, field, replace
 from typing import List, Optional, Union
 
@@ -106,7 +107,7 @@ def __init__(self, name: str, collection: Optional[List[Union[Collection, UIDPro
         self._update_json_attrs_if_valid(new_json_attrs)
 
     def validate(self, api=None, is_patch=False, force_validation: bool = False):
-        from cript.nodes.exceptions import CRIPTOrphanedMaterialError
+        from cript.nodes.exceptions import CRIPTOrphanedMaterialWarning
         from cript.nodes.util.core import get_orphaned_experiment_exception
 
         # First validate like other nodes
@@ -122,7 +123,7 @@ def validate(self, api=None, is_patch=False, force_validation: bool = False):
                 project_inventory_materials.append(material)
         for material in project_graph_materials:
             if material not in self.material and material not in project_inventory_materials:
-                raise CRIPTOrphanedMaterialError(material)
+                warnings.warn(CRIPTOrphanedMaterialWarning(material))
 
         # Check graph for orphaned nodes, that should be listed in the experiments
         project_experiments = self.find_children({"node": ["Experiment"]})
@@ -145,7 +146,7 @@ def validate(self, api=None, is_patch=False, force_validation: bool = False):
                     experiment_nodes.append(ex_node)
             for node in project_graph_nodes:
                 if node not in experiment_nodes:
-                    raise get_orphaned_experiment_exception(node)
+                    warnings.warn(get_orphaned_experiment_exception(node))
 
     @property
     @beartype