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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,52 +1,47 @@ | ||
| --- | ||
| name: Test 📦 | ||
|
|
||
| on: | ||
| pull_request: | ||
| types: | ||
| - opened | ||
| - synchronize | ||
| - reopened | ||
| - ready_for_review | ||
| branches: | ||
| - main | ||
| push: | ||
| branches: | ||
| - main | ||
| name: Test and QC 🧪 | ||
|
|
||
| on: | ||
| workflow_call: | ||
|
|
||
| concurrency: | ||
| group: test-${{ github.event.pull_request.number || github.ref }} | ||
| cancel-in-progress: true | ||
|
|
||
| env: | ||
| TEMPLATE_REF: main | ||
| TEMPLATE_REPO: boehringer-ingelheim/dv.templates | ||
|
|
||
| jobs: | ||
| test: | ||
| name: ${{ vars.CI_IMAGE }} | ||
| runs-on: ubuntu-latest | ||
| container: | ||
| image: ${{ vars.CI_IMAGE }} | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
|
|
||
| steps: | ||
| - name: Checkout project ⬇️ | ||
| uses: actions/checkout@v4 | ||
|
|
||
| - name: Checkout Repo Templates | ||
| - name: Checkout templates repo ⬇️ | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| ref: main | ||
| repository: boehringer-ingelheim/dv.templates | ||
| ref: ${{env.TEMPLATE_REF}} | ||
| repository: ${{env.TEMPLATE_REPO}} | ||
| sparse-checkout: | | ||
| scripts/ | ||
| inst/validation | ||
| path: templates | ||
|
|
||
| - name: Install package dependencies 📄 | ||
| uses: boehringer-ingelheim/dv.templates/.github/actions/dependencies@main | ||
|
|
||
| - name: Test 📦 | ||
| run: Rscript templates/scripts/test.R | ||
| - name: Test and QC 🧪 | ||
| run: templates/scripts/test_qc_pkg.R | ||
| shell: Rscript {0} | ||
|
|
||
| - name: Archive validation results | ||
| - name: Archive validation results ⬆️ | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: val_results | ||
| path: inst/validation/results | ||
| path: inst/validation/results |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,40 @@ | ||
| local({ | ||
| # This is evaluated inside a local because, otherwise, all the variables created in the chunks of the rendered | ||
| # document leak into the environment | ||
|
|
||
| validation_root <- "./inst/validation" | ||
| validation_report_rmd <- file.path(validation_root, "val_report.Rmd") | ||
| validation_report_html <- "val_report.html" | ||
| validation_results <- file.path(validation_root, "results") | ||
| val_param_rds <- file.path(validation_results, "val_param.rds") | ||
|
|
||
| stopifnot(dir.exists(validation_root)) | ||
| stopifnot(file.exists(validation_report_rmd)) | ||
|
|
||
| stopifnot(dir.exists(validation_results)) | ||
| unlink(list.files(validation_results)) | ||
|
|
||
| saveRDS( | ||
| list( | ||
| package = pkg_name, | ||
| tests = test_results, | ||
| version = pkg_version | ||
| ), | ||
| val_param_rds | ||
| ) | ||
|
|
||
| rmarkdown::render( | ||
| input = validation_report_rmd, | ||
| params = list( | ||
| package = pkg_name, | ||
| tests = test_results, | ||
| version = pkg_version | ||
| ), | ||
| output_dir = validation_results, | ||
| output_file = validation_report_html | ||
| ) | ||
|
|
||
| # We use one of the leaked variables, created inside the validation report to asses if the validation is | ||
| # succesful or not | ||
| VALIDATION_PASSED | ||
| }) |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,7 @@ | ||
| # Use a list to declare the specs | ||
|
|
||
| specs_list <- list | ||
|
|
||
| example_spec <- specs_list( | ||
| a_spec = "spec" | ||
| ) |
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