Python project template update (#20)

* quarto version

* Cruft update

* autoformat

.cruft.json

@@ -1,6 +1,6 @@
 {
   "template": "https://github.com/scverse/cookiecutter-scverse",
-  "commit": "66a3c30e185cf0deb57a95329b5f3fec7b9f1352",
+  "commit": "4c8f4683073074b201a45b173d91b2a352d4a194",
   "checkout": null,
   "context": {
     "cookiecutter": {
@@ -10,8 +10,9 @@
       "author_full_name": "Gregor Sturm",
       "author_email": "[email protected]",
       "github_user": "sturmgre",
-      "project_repo": "ssh://[email protected]:7999/binfdevops/dso.git",
+      "github_repo": "dso",
       "license": "MIT License",
+      "ide_integration": true,
       "_copy_without_render": [
         ".github/workflows/build.yaml",
         ".github/workflows/test.yaml",

.editorconfig

@@ -8,10 +8,7 @@ charset = utf-8
 trim_trailing_whitespace = true
 insert_final_newline = true
 
-[*.{yml,yaml}]
-indent_size = 2
-
-[.cruft.json]
+[{*.{yml,yaml,toml},.cruft.json}]
 indent_size = 2
 
 [Makefile]

.gitignore

@@ -6,24 +6,15 @@ buck-out/
 # Compiled files
 .venv/
 __pycache__/
-.mypy_cache/
-.ruff_cache/
+.*cache/
 
 # Distribution / packaging
-/build/
 /dist/
-/*.egg-info/
 
 # Tests and coverage
-/.pytest_cache/
-/.cache/
 /data/
 /node_modules/
 
 # docs
 /docs/generated/
 /docs/_build/
-
-# IDEs
-/.idea/
-/.vscode/

.pre-commit-config.yaml

@@ -32,6 +32,10 @@ repos:
       # Check that there are no merge conflicts (could be generated by template sync)
       - id: check-merge-conflict
         args: [--assume-in-merge]
+  - repo: https://github.com/tox-dev/pyproject-fmt
+    rev: "2.2.4"
+    hooks:
+      - id: pyproject-fmt
   - repo: local
     hooks:
       - id: forbid-to-commit

.prettierrc.yaml

@@ -0,0 +1,7 @@
+overrides:
+  # JSON with comments and trailing commas
+  - files: .vscode/*.json
+    options:
+      parser: json5
+      quoteProps: preserve
+      singleQuote: false

.vscode/extensions.json

@@ -0,0 +1,18 @@
+{
+    "recommendations": [
+        // GitHub integration
+        "github.vscode-github-actions",
+        "github.vscode-pull-request-github",
+        // Language support
+        "ms-python.python",
+        "ms-python.vscode-pylance",
+        "ms-toolsai.jupyter",
+        "tamasfe.even-better-toml",
+        // Dependency management
+        "ninoseki.vscode-mogami",
+        // Linting and formatting
+        "editorconfig.editorconfig",
+        "charliermarsh.ruff",
+        "esbenp.prettier-vscode",
+    ],
+}

.vscode/launch.json

@@ -0,0 +1,33 @@
+{
+    // Use IntelliSense to learn about possible attributes.
+    // Hover to view descriptions of existing attributes.
+    // For more information, visit: https://go.microsoft.com/fwlink/?linkid=830387
+    "version": "0.2.0",
+    "configurations": [
+        {
+            "name": "Python: Build Documentation",
+            "type": "debugpy",
+            "request": "launch",
+            "module": "sphinx",
+            "args": ["-M", "html", ".", "_build"],
+            "cwd": "${workspaceFolder}/docs",
+            "console": "internalConsole",
+            "justMyCode": false,
+        },
+        {
+            "name": "Python: Debug Test",
+            "type": "debugpy",
+            "request": "launch",
+            "program": "${file}",
+            "purpose": ["debug-test"],
+            "console": "internalConsole",
+            "justMyCode": false,
+            "env": {
+                "PYTEST_ADDOPTS": "--color=yes",
+            },
+            "presentation": {
+                "hidden": true,
+            },
+        },
+    ],
+}

.vscode/settings.json

@@ -0,0 +1,18 @@
+{
+    "[python][jsonc][yaml]": {
+        "editor.formatOnSave": true,
+    },
+    "[python]": {
+        "editor.defaultFormatter": "charliermarsh.ruff",
+        "editor.codeActionsOnSave": {
+            "source.fixAll": "always",
+            "source.organizeImports": "always",
+        },
+    },
+    "[jsonc][yaml]": {
+        "editor.defaultFormatter": "esbenp.prettier-vscode",
+    },
+    "python.analysis.typeCheckingMode": "basic",
+    "python.testing.pytestEnabled": true,
+    "python.testing.pytestArgs": ["-vv", "--color=yes"],
+}

README.md

@@ -137,4 +137,4 @@ dso was initially developed by
  * [Daniel Schreyer](https://github.com/dschreyer)
  * [Alexander Peltzer](https://github.com/apeltzer)
 
-DSO depends on many great open source projects, most notably [dvc](https://github.com/iterative/dvc), [hiyapyco](https://github.com/zerwes/hiyapyco) and [jinja2](https://jinja.palletsprojects.com/). 
+DSO depends on many great open source projects, most notably [dvc](https://github.com/iterative/dvc), [hiyapyco](https://github.com/zerwes/hiyapyco) and [jinja2](https://jinja.palletsprojects.com/).