Merge pull request #226 from BodenmillerGroup/citation

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BodenmillerGroup · Nov 21, 2023 · 4b7ee5f · 4b7ee5f
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diff --git a/README.md b/README.md
@@ -14,3 +14,18 @@
 A toolkit for processing multiplexed tissue images
 
 Documentation is available at https://bodenmillergroup.github.io/steinbock
+
+## Citation
+
+Please cite the following paper when using `steinbock` in your work:
+
+>  Windhager, J., Zanotelli, V.R.T., Schulz, D. et al. An end-to-end workflow for multiplexed image processing and analysis. Nat Protoc (2023). https://doi.org/10.1038/s41596-023-00881-0
+
+    @article{Windhager2023,
+        author = {Windhager, Jonas and Zanotelli, Vito R.T. and Schulz, Daniel and Meyer, Lasse and Daniel, Michelle and Bodenmiller, Bernd and Eling, Nils},
+        title = {An end-to-end workflow for multiplexed image processing and analysis},
+        year = {2023},
+        doi = {10.1038/s41596-023-00881-0},
+        URL = {https://www.nature.com/articles/s41596-023-00881-0},
+        journal = {Nature Protocols}
+    }
diff --git a/docs/index.md b/docs/index.md
@@ -51,15 +51,17 @@ Workshop 2023: [https://github.com/BodenmillerGroup/ImagingWorkshop2023](https:/
 Please cite the following paper when using *steinbock* in your work:
 
 !!! quote
-    Windhager J, Bodenmiller B, Eling N (2021). An end-to-end workflow for multiplexed image processing and analysis. bioRxiv. doi: https://doi.org/10.1101/2021.11.12.468357.
+    Windhager, J., Zanotelli, V.R.T., Schulz, D. et al. An end-to-end workflow for multiplexed image processing and analysis. Nat Protoc (2023). https://doi.org/10.1038/s41596-023-00881-0
 
 ```
-@article{Windhager2021,
-  author = {Windhager, Jonas and Bodenmiller, Bernd and Eling, Nils},
+@article{Windhager2023,
+  author = {Windhager, Jonas and Zanotelli, Vito R.T. and Schulz, Daniel and Meyer, Lasse and Daniel, Michelle and Bodenmiller, Bernd and Eling, Nils},
   title = {An end-to-end workflow for multiplexed image processing and analysis},
-  year = {2021},
-  doi = {10.1101/2021.11.12.468357},
-  URL = {https://www.biorxiv.org/content/early/2021/11/13/2021.11.12.468357},
-  journal = {bioRxiv}
+  year = {2023},
+  doi = {10.1038/s41596-023-00881-0},
+  URL = {https://www.nature.com/articles/s41596-023-00881-0},
+  journal = {Nature Protocols}
 }
 ```
+
+If you have issues accessing the manuscript, please reach out to us and we can share the PDF version.