Docs: Fix commands given in the examples #41
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failed
Dec 18, 2024 in 0s
31 tests run, 19 passed, 11 skipped, 1 failed.
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Check failure on line 1 in tests/test_O1_workflow.py
github-actions / JUnit Test Report
test_O1_workflow.test_ValidateSynthesis@group_O1
failed on setup with "subprocess.CalledProcessError: Command '['brainbuilder', 'atlases', '-n', '6,5,4,3,2,1', '-t', '200,100,100,100,100,200', '-d', '100', '-o', '/home/runner/work/synthesis-workflow/synthesis-workflow/.tox/py310/tmp/popen-gw1/test_ValidateSynthesis0/small_O1', 'column', '-a', '1000']' returned non-zero exit status 1."
Raw output
tmp_path = PosixPath('/home/runner/work/synthesis-workflow/synthesis-workflow/.tox/py310/tmp/popen-gw1/test_ValidateSynthesis0')
@pytest.fixture
def small_O1(tmp_path):
"""Dump a small O1 atlas in folder path."""
atlas_dir = tmp_path / "small_O1"
# fmt: off
with open(os.devnull, "w", encoding="utf-8") as f:
> check_call(["brainbuilder", "atlases",
"-n", "6,5,4,3,2,1",
"-t", "200,100,100,100,100,200",
"-d", "100",
"-o", str(atlas_dir),
"column",
"-a", "1000",
], stdout=f, stderr=f)
/home/runner/work/synthesis-workflow/synthesis-workflow/tests/conftest.py:50:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
popenargs = (['brainbuilder', 'atlases', '-n', '6,5,4,3,2,1', '-t', '200,100,100,100,100,200', ...],)
kwargs = {'stderr': <_io.TextIOWrapper name='/dev/null' mode='w' encoding='utf-8'>, 'stdout': <_io.TextIOWrapper name='/dev/null' mode='w' encoding='utf-8'>}
retcode = 1
cmd = ['brainbuilder', 'atlases', '-n', '6,5,4,3,2,1', '-t', '200,100,100,100,100,200', ...]
def check_call(*popenargs, **kwargs):
"""Run command with arguments. Wait for command to complete. If
the exit code was zero then return, otherwise raise
CalledProcessError. The CalledProcessError object will have the
return code in the returncode attribute.
The arguments are the same as for the call function. Example:
check_call(["ls", "-l"])
"""
retcode = call(*popenargs, **kwargs)
if retcode:
cmd = kwargs.get("args")
if cmd is None:
cmd = popenargs[0]
> raise CalledProcessError(retcode, cmd)
E subprocess.CalledProcessError: Command '['brainbuilder', 'atlases', '-n', '6,5,4,3,2,1', '-t', '200,100,100,100,100,200', '-d', '100', '-o', '/home/runner/work/synthesis-workflow/synthesis-workflow/.tox/py310/tmp/popen-gw1/test_ValidateSynthesis0/small_O1', 'column', '-a', '1000']' returned non-zero exit status 1.
/opt/hostedtoolcache/Python/3.10.15/x64/lib/python3.10/subprocess.py:369: CalledProcessError
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