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FROM python:3.10-slim | ||
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ARG CI_JOB_TOKEN | ||
ARG BBP_CA_CERT | ||
ARG REF_NAME=main # Default to 'main' if REF_NAME is not passed | ||
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RUN apt-get update && \ | ||
DEBIAN_FRONTEND="noninteractive" TZ="Europe/Zurich" apt-get install -y tzdata && \ | ||
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# export PATH=$PATH:$PWD/build/bin | ||
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# Install the pipeline repository (along with the bbp-atlas CLI) | ||
RUN pip install -i https://bbpteam.epfl.ch/repository/devpi/simple/ blue_brain_atlas_pipeline/ | ||
RUN pip install git+https://github.com/BlueBrain/bbp-atlas-pipeline.git@${REF_NAME} | ||
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# For install dependencies | ||
RUN git config --global --add url."https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/".insteadOf https://bbpgitlab.epfl.ch/ | ||
# Install dependencies | ||
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# module load py-token-fetch | ||
RUN pip install -i https://bbpteam.epfl.ch/repository/devpi/simple/ "blue-brain-token-fetch>=1.0.0" | ||
RUN pip install "blue-brain-token-fetch>=1.0.0" | ||
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# module load py-bba-datafetch | ||
RUN pip install -i https://bbpteam.epfl.ch/repository/devpi/simple/ "bba-data-fetch>=0.3.0" | ||
RUN pip install git+https://github.com/BlueBrain/bbp-atlas-data-fetch.git@v0.3.0 | ||
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# densities validation | ||
RUN pip install -i https://bbpteam.epfl.ch/repository/devpi/simple/ "densities-validation>=0.1.1" | ||
RUN pip install git+https://github.com/BlueBrain/[email protected] | ||
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# leaves-only | ||
RUN pip install -i https://bbpteam.epfl.ch/repository/devpi/simple/ "cell-densities>=0.2.1" | ||
RUN git clone --branch v0.2.1 https://github.com/BlueBrain/cell-density-validations.git cell-density-validation | ||
RUN pip install cell-density-validation/cell-densities/ | ||
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# module load py-bba-webexporter | ||
RUN pip install -i https://bbpteam.epfl.ch/repository/devpi/simple/ "blue-brain-atlas-web-exporter>=3.0.0" | ||
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# module load py-data-integrity-check | ||
RUN pip install -i https://bbpteam.epfl.ch/repository/devpi/simple/ "bba-data-integrity-check>=0.2.0" | ||
RUN pip install git+https://github.com/BlueBrain/[email protected] | ||
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RUN pip install blue-cwl | ||
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# module load py-bba-data-push | ||
RUN pip install -i https://bbpteam.epfl.ch/repository/devpi/simple/ "bba-data-push>=4.3.0" | ||
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RUN pip install git+https://bbpgitlab.epfl.ch/dke/users/jonathanlurie/[email protected] | ||
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RUN pip install -i https://bbpteam.epfl.ch/repository/devpi/simple/ "pipeline-validator>=0.3.1" | ||
RUN pip install "blue-brain-data-push>=4.3.0" | ||
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RUN git config --global --remove-section url."https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/" | ||
RUN pip install "bbp-atlas-pipeline-validator>=0.3.1" | ||
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RUN pip install "atlas-commons>=0.1.5" | ||
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