Fix #138

Bioprotocols · Apr 27, 2022 · 4abcfc9 · 4abcfc9
1 parent 802b65d
commit 4abcfc9
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Showing 4 changed files with 42 additions and 57 deletions.
diff --git a/paml/data.py b/paml/data.py
@@ -67,7 +67,7 @@ def is_in_mask(entry, row_col_pairs):
                             is_in_mask(coordinate_to_row_col(x), row_col_pairs)
                             for x in contents_array.data
                         ],
-                        coords={Strings.ALIQUOT: contents_array}
+                        coords=[(Strings.ALIQUOT, contents_array.data)]
                     )
     return json.dumps(mask_array.to_dict())
 SampleArray.mask = sample_array_mask

diff --git a/paml/sample_maps.py b/paml/sample_maps.py
@@ -44,7 +44,7 @@ def many_to_one_sample_map_get_map(self):
         source_to_target_arrays = {
             source.identity : xr.DataArray([""]*len(aliquots),
                                             dims=(target.identity),
-                                            coords={target.identity: aliquots})
+                                            coords=[(target.identity, aliquots)])
             for source in sources
         }
 
@@ -68,7 +68,7 @@ def one_to_many_sample_map_get_map(self):
         source_to_target_arrays = {
             target.identity : xr.DataArray([""]*len(aliquots),
                                             dims=(source.identity),
-                                            coords={source.identity: aliquots})
+                                            coords=[(source.identity, aliquots)])
             for target in targets
         }
 

diff --git a/test/test_samplemap.py b/test/test_samplemap.py
@@ -115,8 +115,8 @@ def test_create_protocol(self):
                                                 for reagent in reagents]
                                                 for id in aliquot_ids],
                                              dims=("aliquot", "contents"),
-                                             coords={"aliquot": aliquot_ids,
-                                                     "contents": [r.identity for r in reagents]}).to_dict()))
+                                             coords=[("aliquot", aliquot_ids),
+                                                     ("contents", [r.identity for r in reagents])]).to_dict()))
         # 3.
         sample_array_parameter = create_source.pin_parameter("sample_array")
         [old_input] = [x for x in create_source.inputs if x.name == "sample_array"]