Add root index file back #68
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| on: | |
| push: | |
| branches: | |
| - main | |
| - bioc2024-recap # allow while sharing preview | |
| name: Render and Publish | |
| jobs: | |
| build-deploy: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| # add software dependencies here | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Install R dependencies | |
| run: Rscript -e 'install.packages(c("jsonlite", "htmltools", "rmarkdown", "RefManageR", "dplyr"))' | |
| - name: Publish to GitHub Pages (and render) | |
| uses: quarto-dev/quarto-actions/publish@v2 | |
| with: | |
| target: gh-pages | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # this secret is always available for github actions |