Repository containing all material for the MALTAomics Summer School held at the University of Malta 11-15 Sep 2023.
This repository will be shared with all attendees and presenters.
Zoom Link for online attendance
09:00 – 09:45: Registration and Welcome from Organizers (P. Alexiou)
10:00 – 13:00: Workshop I - Browsing genes and genomes with Ensembl (A. Mushtaq)
Website with training material
13:00 – 14:00: Lunch Break
14:00 – 14:45: Workshop II - Browsing genes and genomes with Ensembl (A. Mushtaq)
14:45 – 15:00: Coffee Break
15:00 – 17:00: Workshop II - Browsing genes and genomes with Ensembl (A. Mushtaq) cont.
09:00 – 09:45: Introduction to Genomic Data Science (P. Alexiou)
10:00 – 13:00: Workshop III – Introduction to Deep Learning for Genomics (D. Cechak, V. Martinek)
13:00 – 14:00: Lunch Break
14:00 – 15:30: Gene regulation discovery in the era of third generation sequencing (E. Maragkakis)
15:30 – 16:00: Coffee Break
16:00 – 17:00: Looking for hairpins in a genomic junkyard, CNNs for genomic annotation (P. Alexiou)
09:00 – 09:45: Introduction to Transcriptomic Data Science (P. Alexiou)
10:00 – 13:00: Workshop IV: Introduction to eXplainable Artificial Intelligence (XAI) (L. Sousa, D. Cea)
13:00 – 14:00: Lunch Break
14:00 – 15:30: Workshop V: Explainability for Deep Neural Networks (K. Gresova)
15:30 – 16:00: Coffee Break
16:00 – 17:00: Workshop V: Explainability for Deep Neural Networks (K. Gresova) cont.
09:00 – 10:30: Introduction to Computer - Aided Drug Design (JP Ebejer)
10:30 – 11:30: Introduction to Molecular Representation and Random Forests (JP Ebejer)
11:30 – 13:00: Workshop VI: Machine Learning for Drug Discovery; some ideas (JP Ebejer)
13:00 – 14:00: Lunch Break
14:00 – 15:30: Workshop VII: Deep Learning for Protein Structure (D. Sramkova)
15:30 – 16:00: Coffee Break
16:00 – 17:00: Workshop VII: Deep Learning for Protein Structure (D. Sramkova) cont.
Evening: Conference Dinner
09:00 – 09:45: Breakthroughs and Challenges in multi-omics (P. Alexiou)
10:00 – 13:00: Workshop VIII: Effective Dissemination and Communication of Research Results (E. Jarour)
13:00 – 14:00: Lunch Break
14:00 – 15:00: Round Table: Biomedical Research in the era of AI (P. Alexiou, E. Maragkakis, JP Ebejer)
15:00 – 15:15: Coffee break
15:15 - 16:00: Round Table: Biomedical Research in the era of AI (P. Alexiou, E. Maragkakis, JP Ebejer) cont.