module__Species

#org.bibliome.alvisnlp.modules.Species

Synopsis

Calls the Species taxon tagger.

This module is experimental.

Description

org.bibliome.alvisnlp.modules.Species applies the Species taxon tagger on the contents of the sections. The Species software must be installed in the speciesDir directory. org.bibliome.alvisnlp.modules.Species crerates an annotation for each taxon tagged by Species.

Parameters

speciesDir

Optional

Type: InputDirectory

Directory where the Species software is installed.

targetLayerName

Optional

Type: String

Layer where to store the tagged taxon names.

constantAnnotationFeatures

Optional

Type: Mapping

Constant features to add to each annotation created by this module

taxidFeature

Optional

Type: String

Feature where to store the identifier of the tagged taxon.

documentFilter

Default value: true

Type: Expression

Only process document that satisfy this filter.

sectionFilter

Default value: true

Type: Expression

Process only sections that satisfy this filter.