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omop-on-fhir-dev

OMOP on FHIR dev environment

Basic Setup

  1. Place any / all FHIR json files you'd like processed under the files-fhir directory
  2. Place the latest csv files from Athena in files-athena
  3. docker-compose up --abort-on-container-exit

First boot will take quite some time as the vocab is loaded.

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OMOP on FHIR dev environment

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  • Dockerfile 87.1%
  • Shell 12.9%