aind-exaspim-soma-detection

Overview

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Figure: Visualization of soma detection pipeline.

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Inference

Step 1: Proposal Generation

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Figure: Example of proposals generated across a large region.

Step 2: Filter Proposals with Heuristics

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Step 3: Classify Proposals with Convolutional Neural Network (CNN)

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Train Classification Model

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Installation

To use the software, in the root directory, run

pip install -e .