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@UCDNJJ
UCDNJJ authored Jan 23, 2024
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Expand Up @@ -12,15 +12,15 @@ Update notes are here: ![Versions](https://github.com/AllenInstitute/scrattch.ta

## Docker

We have setup a docker environemnt for scrattch.taxonomy and scrattch.mapping that contains all the required dependencies and the current version of both scrattch.taxonomy and scrattch.mapping. This docker is accessible through docker hub via: `njjai/scrattch_mapping:0.52.1`.
We have setup a docker environemnt for scrattch.taxonomy and scrattch.mapping that contains all the required dependencies and the current version of both scrattch.taxonomy and scrattch.mapping. This docker is accessible through docker hub via: `njjai/scrattch_mapping:0.52.2`.

#### HPC usage:

##### Non-interactive
`singularity exec --cleanenv docker://njjai/scrattch_mapping:0.52.1 Rscript YOUR_CODE.R`
`singularity exec --cleanenv docker://njjai/scrattch_mapping:0.52.2 Rscript YOUR_CODE.R`

##### Interactive
`singularity shell --cleanenv docker://njjai/scrattch_mapping:0.52.1`
`singularity shell --cleanenv docker://njjai/scrattch_mapping:0.52.2`


## Installation
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