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update to new schema
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UCDNJJ committed Sep 13, 2024
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101 changes: 0 additions & 101 deletions Dockerfile

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6 changes: 3 additions & 3 deletions README.md
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Expand Up @@ -10,15 +10,15 @@ Update notes are here: ![Versions](https://github.com/AllenInstitute/scrattch-ma

## Docker

We have setup a docker environemnt for scrattch.taxonomy and scrattch.mapping that contains all the required dependencies and the current version of both scrattch.taxonomy and scrattch.mapping. This docker is accessible through docker hub via: `njjai/scrattch_mapping:0.6.3`.
We have setup a docker environemnt for scrattch.taxonomy and scrattch.mapping that contains all the required dependencies and the current version of all scrattch packages. This docker is accessible through docker hub via: `njjai/scrattch_mapping:0.6.6`.

#### HPC usage:

##### Non-interactive
`singularity exec --cleanenv docker://njjai/scrattch_mapping:0.6.3 Rscript YOUR_CODE.R`
`singularity exec --cleanenv docker://njjai/scrattch_mapping:0.6.6 Rscript YOUR_CODE.R`

##### Interactive
`singularity shell --cleanenv docker://njjai/scrattch_mapping:0.6.3`
`singularity shell --cleanenv docker://njjai/scrattch_mapping:0.6.6`


## Installation
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