Merge pull request #5 from AllenInstitute/feature/modify-dependency-g…

…roups

Create Separate optional dependency groups for formatting and typing

.github/workflows/release.yml

@@ -34,6 +34,7 @@ jobs:
       MAJOR_VERSION: ${{ steps.get-version-and-commit-sha.outputs.MAJOR_VERSION }}
       MINOR_VERSION: ${{ steps.get-version-and-commit-sha.outputs.MINOR_VERSION }}
       PATCH_VERSION: ${{ steps.get-version-and-commit-sha.outputs.PATCH_VERSION }}
+      VERSION_TAG: ${{ steps.get-version-and-commit-sha.outputs.VERSION_TAG }}
       COMMIT_SHA: ${{ steps.get-version-and-commit-sha.outputs.COMMIT_SHA }}
     steps:
       - name: Checkout
@@ -80,7 +81,8 @@ jobs:
           echo "PATCH_VERSION=$patch_version" >> $GITHUB_OUTPUT
           short_version="$major_version.$minor_version"
           echo "SHORT_VERSION=$short_version" >> $GITHUB_OUTPUT
-          commit_sha=$(git rev-parse $latest_tag)
+          echo "VERSION_TAG=$latest_tag" >> $GITHUB_OUTPUT
+          commit_sha=$(git rev-list -n 1 $latest_tag)
           echo "COMMIT_SHA=$commit_sha" >> $GITHUB_OUTPUT
       - name: Show version
         run: |
@@ -89,6 +91,7 @@ jobs:
           echo MAJOR_VERSION: ${{ steps.get-version-and-commit-sha.outputs.MAJOR_VERSION }}
           echo MINOR_VERSION: ${{ steps.get-version-and-commit-sha.outputs.MINOR_VERSION }}
           echo PATCH_VERSION: ${{ steps.get-version-and-commit-sha.outputs.PATCH_VERSION }}
+          echo VERSION_TAG: ${{ steps.get-version-and-commit-sha.outputs.VERSION_TAG }}
           echo COMMIT_SHA: ${{ steps.get-version-and-commit-sha.outputs.COMMIT_SHA }}
 
   build:
@@ -99,7 +102,7 @@ jobs:
     steps:
       - uses: actions/checkout@v4
         with:
-          ref: ${{ needs.bump.outputs.COMMIT_SHA }}
+          ref: ${{ needs.bump.outputs.VERSION_TAG }}
       - name: Set up Python ${{ github.event.inputs.python-version }}
         uses: actions/setup-python@v4        
         with:

Makefile

@@ -73,14 +73,13 @@ $(PYTHON):
 install: $(INSTALL_STAMP) ## Installs package dependencies
 $(INSTALL_STAMP): $(PYTHON) $(DEP_FILES)
 	@. $(VENV_BIN)/activate;\
-	$(PIP) install -e .[dev]; 
+	$(PIP) install -e .[all]; 
 	@touch $(INSTALL_STAMP)
 
 install-release: clean-install-stamp $(PYTHON) $(DEP_FILES) ## Installs package for release
 	@. $(VENV_BIN)/activate;\
 	$(PIP) install .[release]
 
-
 install-force: clean-install-stamp install ## Force install package dependencies
 
 link-packages: ## Link local packages to virtualenv  

pyproject.toml

@@ -10,7 +10,7 @@ build-backend = "hatchling.build"
 # -----------------------------------------------------------------------------
 [project]
 name = "aibs-informatics-test-resources"
-authors = [{ name = "AIBS Informatics Group"}]
+authors = [{ name = "AIBS Informatics Group", email = "[email protected]"}]
 maintainers = [{ name = "AIBS Informatics Group", email = "[email protected]"}]
 description = "unit test resources for AIBS informatics packages"
 readme = { file = "README.md", content-type = "text/markdown" }
@@ -19,21 +19,30 @@ dynamic = ["version"]
 
 requires-python = ">=3.9"
 dependencies = [
-    "black==23.11.0",
     "coverage[toml]~=7.3",
-    "flake8~=6.1.0",
-    "isort~=5.10",
-    "mypy~=1.6",
     "pytest~=7.4",
     "pytest-cov",
 ]
 
 [project.optional-dependencies]
+all = [
+    "aibs-informatics-test-resources[formatting]",
+    "aibs-informatics-test-resources[typing]",
+]
+
+formatting = [
+    "black==23.11.0",
+    "flake8~=6.1.0",
+    "isort~=5.10",
+]
+
+typing = [
+    "mypy~=1.6",
+]
 
 release = [
     "build",
     "bump-my-version",
-    "twine",
     "wheel",
 ]