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@AllenCellModeling

Allen Institute for Cell Science - Modeling

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  1. pytorch_fnet pytorch_fnet Public

    Three dimensional cross-modal image inference

    Python 153 61

  2. pytorch_integrated_cell pytorch_integrated_cell Public

    Integrated Cell project implemented in pytorch

    Python 43 13

  3. aicsimageio aicsimageio Public

    Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

    Python 207 51

  4. aicspylibczi aicspylibczi Public

    Forked from elhuhdron/pylibczi

    Python module utilizing libCZI for reading Zeiss CZI files.

    C++ 36 8

  5. cookiecutter-pypackage cookiecutter-pypackage Public

    A cookiecutter template to generate a new Python package.

    Python 23 7

Repositories

Showing 10 of 76 repositories
  • czi-to-ome-xslt Public

    A repository of XSL transform sheets to map CZI metadata to OME.

    AllenCellModeling/czi-to-ome-xslt’s past year of commit activity
    XSLT 2 0 6 0 Updated Dec 13, 2024
  • cyto-dl Public
    AllenCellModeling/cyto-dl’s past year of commit activity
    Python 17 6 8 4 Updated Dec 13, 2024
  • aicspylibczi Public Forked from elhuhdron/pylibczi

    Python module utilizing libCZI for reading Zeiss CZI files.

    AllenCellModeling/aicspylibczi’s past year of commit activity
    C++ 36 GPL-3.0 9 14 1 Updated Nov 20, 2024
  • fish_morphology_code Public

    Basic code and automated workflows to produce analysis friendly data from annotated FISH images

    AllenCellModeling/fish_morphology_code’s past year of commit activity
    Python 3 2 5 4 Updated Nov 4, 2024
  • aicsimageio Public

    Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

    AllenCellModeling/aicsimageio’s past year of commit activity
    Python 207 51 7 7 Updated Aug 22, 2024
  • napari-aicsimageio Public

    Multiple file format reading directly into napari using pure Python

    AllenCellModeling/napari-aicsimageio’s past year of commit activity
    Python 34 GPL-3.0 10 16 (3 issues need help) 3 Updated Jul 21, 2024
  • pointcloudutils Public
    AllenCellModeling/pointcloudutils’s past year of commit activity
    Python 0 0 0 0 Updated Apr 17, 2024
  • nvidia-docker-stats Public

    Monitor nvidia gpu unit load associated with docker spawned processes

    AllenCellModeling/nvidia-docker-stats’s past year of commit activity
    Python 29 GPL-3.0 13 1 2 Updated Oct 1, 2023
  • aics_dask_utils Public

    Utility functions commonly used by AICS projects for interacting with Dask

    AllenCellModeling/aics_dask_utils’s past year of commit activity
    Python 1 0 2 0 Updated Aug 10, 2023
  • aicsimageprocessing Public archive

    A generalized scientific image processing module from the Allen Institute for Cell Science.

    AllenCellModeling/aicsimageprocessing’s past year of commit activity
    Python 2 1 1 1 Updated Aug 2, 2023
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