Merge branch 'develop' into dependabot/npm_and_yarn/covalent_ui/webap…

…p/ip-1.1.9

.github/workflows/boilerplate.yml

@@ -28,7 +28,7 @@ jobs:
           fetch-depth: 0
       - name: Get changed files
         id: changed-files
-        uses: tj-actions/changed-files@v31
+        uses: tj-actions/changed-files@v41
         with:
           files: |
             **/*.py

.github/workflows/requirements.yml

@@ -39,7 +39,7 @@ jobs:
         run: python -m pip install pip-check-reqs
 
       - name: Check extra core requirements
-        run: pip-extra-reqs -r werkzeug -r python-multipart covalent covalent_dispatcher covalent_ui --ignore-requirement=qiskit --ignore-requirement=qiskit-ibm-provider --ignore-requirement=amazon-braket-pennylane-plugin
+        run: pip-extra-reqs -r python-multipart covalent covalent_dispatcher covalent_ui --ignore-requirement=qiskit --ignore-requirement=qiskit-ibm-provider --ignore-requirement=amazon-braket-pennylane-plugin
 
       - name: Check missing SDK requirements
         run: >

.github/workflows/tests.yml

@@ -217,9 +217,10 @@ jobs:
         if: env.BUILD_AND_RUN_ALL
         id: covalent_start
         run: |
+          export COVALENT_ENABLE_TASK_PACKING=1
           covalent db migrate
           if [ "${{ matrix.backend }}" = 'dask' ] ; then
-            COVALENT_ENABLE_TASK_PACKING=1 covalent start -d
+            covalent start -d
           elif [ "${{ matrix.backend }}" = 'local' ] ; then
             covalent start --no-cluster -d
           else

CHANGELOG.md

@@ -7,6 +7,64 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [UNRELEASED]
 
+## [0.235.1-rc.0] - 2024-06-10
+
+### Authors
+
+- Santosh kumar <[email protected]>
+- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
+- Co-authored-by: kessler-frost <[email protected]>
+
+
+### Fixed
+
+- Ignoring all errors when importing qelectrons instead of only `ImportError`
+
+## [0.235.0-rc.0] - 2024-05-29
+
+### Authors
+
+- Ara Ghukasyan <[email protected]>
+- Casey Jao <[email protected]>
+
+
+### Changed
+
+- Updated Slurm plugin docs to note possible SSH limitation
+- Updated Slurm plugin docs to remove `sshproxy` section
+- API base endpoint is now configurable from an environment variable
+- Removed unused lattice attributes to reduce asset uploads
+
+### Fixed
+
+- Improved handling of Covalent version mismatches between client and
+  executor environments
+
+### Removed
+
+- Removed obsolete `migrate-pickled-result-object` command
+
+### Operations
+
+- Allow installing a specific commit sha to ease testing
+
+## [0.234.1-rc.0] - 2024-05-10
+
+### Authors
+
+- Andrew S. Rosen <[email protected]>
+- Sankalp Sanand <[email protected]>
+- Co-authored-by: Alejandro Esquivel <[email protected]>
+- Casey Jao <[email protected]>
+- Co-authored-by: Santosh kumar <[email protected]>
+
+
+### Fixed
+
+- Sublattice electron function strings are now parsed correctly
+- The keys of dictionary inputs to electrons no longer need be strings.
+- Fixed inaccuracies in task packing exposed by no longer uploading null attributes upon dispatch.
+
 ### Operations
 
 - Fixed nightly workflow's calling of other workflows.

VERSION

@@ -1 +1 @@
-0.234.0-rc.0
+0.235.1-rc.0

covalent/__init__.py

@@ -51,7 +51,8 @@
 from ._workflow.electron import wait  # nopycln: import
 from .executor.utils import get_context  # nopycln: import
 
-with contextlib.suppress(ImportError):
+with contextlib.suppress(Exception):
+    # try to load qelectron modules
     from ._workflow.qelectron import qelectron  # nopycln: import
     from .quantum import QCluster  # nopycln: import
 

covalent/_api/apiclient.py

@@ -33,7 +33,7 @@ def __init__(self, dispatcher_addr: str, adapter: HTTPAdapter = None, auto_raise
         self.adapter = adapter
         self.auto_raise = auto_raise
 
-    def prepare_headers(self, **kwargs):
+    def prepare_headers(self, kwargs):
         extra_headers = CovalentAPIClient.get_extra_headers()
         headers = kwargs.get("headers", {})
         if headers:
@@ -42,7 +42,7 @@ def prepare_headers(self, **kwargs):
         return headers
 
     def get(self, endpoint: str, **kwargs):
-        headers = self.prepare_headers(**kwargs)
+        headers = self.prepare_headers(kwargs)
         url = self.dispatcher_addr + endpoint
         try:
             with requests.Session() as session:
@@ -62,7 +62,7 @@ def get(self, endpoint: str, **kwargs):
         return r
 
     def put(self, endpoint: str, **kwargs):
-        headers = self.prepare_headers()
+        headers = self.prepare_headers(kwargs)
         url = self.dispatcher_addr + endpoint
         try:
             with requests.Session() as session:
@@ -81,7 +81,7 @@ def put(self, endpoint: str, **kwargs):
         return r
 
     def post(self, endpoint: str, **kwargs):
-        headers = self.prepare_headers()
+        headers = self.prepare_headers(kwargs)
         url = self.dispatcher_addr + endpoint
         try:
             with requests.Session() as session:
@@ -100,7 +100,7 @@ def post(self, endpoint: str, **kwargs):
         return r
 
     def delete(self, endpoint: str, **kwargs):
-        headers = self.prepare_headers()
+        headers = self.prepare_headers(kwargs)
         url = self.dispatcher_addr + endpoint
         try:
             with requests.Session() as session:

covalent/_dispatcher_plugins/local.py

@@ -14,6 +14,7 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 
+import os
 import tempfile
 from copy import deepcopy
 from functools import wraps
@@ -47,6 +48,9 @@
 dispatch_cache_dir.mkdir(parents=True, exist_ok=True)
 
 
+BASE_ENDPOINT = os.getenv("COVALENT_DISPATCH_BASE_ENDPOINT", "/api/v2/dispatches")
+
+
 def get_redispatch_request_body_v2(
     dispatch_id: str,
     staging_dir: str,
@@ -540,10 +544,10 @@ def register_manifest(
             dispatcher_addr = format_server_url()
 
         stripped = strip_local_uris(manifest) if push_assets else manifest
-        endpoint = "/api/v2/dispatches"
+        endpoint = BASE_ENDPOINT
 
         if parent_dispatch_id:
-            endpoint = f"{endpoint}/{parent_dispatch_id}/subdispatches"
+            endpoint = f"{BASE_ENDPOINT}/{parent_dispatch_id}/sublattices"
 
         r = APIClient(dispatcher_addr).post(endpoint, data=stripped.model_dump_json())
         r.raise_for_status()
@@ -596,15 +600,15 @@ def _upload(assets: List[AssetSchema]):
         number_uploaded = 0
         for i, asset in enumerate(assets):
             if not asset.remote_uri or not asset.uri:
-                app_log.debug(f"Skipping asset {i+1} out of {total}")
+                app_log.debug(f"Skipping asset {i + 1} out of {total}")
                 continue
             if asset.remote_uri.startswith(local_scheme_prefix):
                 copy_file_locally(asset.uri, asset.remote_uri)
                 number_uploaded += 1
             else:
                 _upload_asset(asset.uri, asset.remote_uri)
                 number_uploaded += 1
-            app_log.debug(f"Uploaded asset {i+1} out of {total}.")
+            app_log.debug(f"Uploaded asset {i + 1} out of {total}.")
         app_log.debug(f"uploaded {number_uploaded} assets.")
 
 
@@ -615,6 +619,7 @@ def _upload_asset(local_uri, remote_uri):
     else:
         local_path = local_uri
 
+    filesize = os.path.getsize(local_path)
     with open(local_path, "rb") as reader:
         app_log.debug(f"uploading to {remote_uri}")
         f = furl(remote_uri)
@@ -624,6 +629,11 @@ def _upload_asset(local_uri, remote_uri):
         dispatcher_addr = f"{scheme}://{host}:{port}"
         endpoint = str(f.path)
         api_client = APIClient(dispatcher_addr)
+        if f.query:
+            endpoint = f"{endpoint}?{f.query}"
+
+        # Workaround for Requests bug when streaming from empty files
+        data = reader.read() if filesize < 50 else reader
 
-        r = api_client.put(endpoint, data=reader)
+        r = api_client.put(endpoint, headers={"Content-Length": str(filesize)}, data=data)
         r.raise_for_status()

covalent/_results_manager/result.py

@@ -18,7 +18,7 @@
 import os
 import re
 from datetime import datetime
-from typing import TYPE_CHECKING, Any, Dict, List, Set, Union
+from typing import TYPE_CHECKING, Any, Dict, List, Union
 
 from .._shared_files import logger
 from .._shared_files.config import get_config
@@ -516,34 +516,3 @@ def _convert_to_electron_result(self) -> Any:
         """
 
         return self._result
-
-
-def _filter_cova_decorators(function_string: str, cova_imports: Set[str]) -> str:
-    """
-    Given a string representing a function, comment out any Covalent-related decorators.
-
-    Args
-        function_string: A string representation of a workflow function.
-
-    Returns:
-        The function string with Covalent-related decorators commented out.
-    """
-
-    has_cova_decorator = False
-    in_decorator = 0
-    function_lines = function_string.split("\n")
-    for i in range(len(function_lines)):
-        line = function_lines[i].strip()
-        if in_decorator > 0:
-            function_lines[i] = f"# {function_lines[i]}"
-            in_decorator += line.count("(")
-            in_decorator -= line.count(")")
-        elif line.startswith("@"):
-            decorator_name = line.split("@")[1].split(".")[0].split("(")[0]
-            if decorator_name in cova_imports:
-                function_lines[i] = f"# {function_lines[i]}"
-                has_cova_decorator = True
-                in_decorator += line.count("(")
-                in_decorator -= line.count(")")
-
-    return "\n".join(function_lines) if has_cova_decorator else function_string

covalent/_serialize/electron.py

@@ -210,8 +210,8 @@ def _get_node_custom_assets(node_attrs: dict) -> Dict[str, AssetSchema]:
 def serialize_node(node_id: int, node_attrs: dict, node_storage_path) -> ElectronSchema:
     meta = _serialize_node_metadata(node_attrs, node_storage_path)
     assets = _serialize_node_assets(node_attrs, node_storage_path)
-    custom_assets = _get_node_custom_assets(node_attrs)
-    return ElectronSchema(id=node_id, metadata=meta, assets=assets, custom_assets=custom_assets)
+    assets._custom = _get_node_custom_assets(node_attrs)
+    return ElectronSchema(id=node_id, metadata=meta, assets=assets)
 
 
 def deserialize_node(e: ElectronSchema, metadata_only: bool = False) -> dict:

covalent/_serialize/lattice.py

@@ -40,10 +40,6 @@
     "workflow_function_string": AssetType.TEXT,
     "doc": AssetType.TEXT,
     "inputs": AssetType.TRANSPORTABLE,
-    "named_args": AssetType.TRANSPORTABLE,
-    "named_kwargs": AssetType.TRANSPORTABLE,
-    "cova_imports": AssetType.JSONABLE,
-    "lattice_imports": AssetType.TEXT,
     "hooks": AssetType.JSONABLE,
 }
 
@@ -112,33 +108,6 @@ def _serialize_lattice_assets(lat, storage_path: str) -> LatticeAssets:
         lat.inputs, ASSET_TYPES["inputs"], storage_path, ASSET_FILENAME_MAP["inputs"]
     )
 
-    # Deprecate
-    named_args_asset = save_asset(
-        lat.named_args,
-        ASSET_TYPES["named_args"],
-        storage_path,
-        ASSET_FILENAME_MAP["named_args"],
-    )
-    named_kwargs_asset = save_asset(
-        lat.named_kwargs,
-        ASSET_TYPES["named_kwargs"],
-        storage_path,
-        ASSET_FILENAME_MAP["named_kwargs"],
-    )
-    cova_imports_asset = save_asset(
-        lat.cova_imports,
-        ASSET_TYPES["cova_imports"],
-        storage_path,
-        ASSET_FILENAME_MAP["cova_imports"],
-    )
-    lattice_imports_asset = save_asset(
-        lat.lattice_imports,
-        ASSET_TYPES["lattice_imports"],
-        storage_path,
-        ASSET_FILENAME_MAP["lattice_imports"],
-    )
-
-    # NOTE: these are actually JSONable
     hooks_asset = save_asset(
         lat.metadata["hooks"],
         ASSET_TYPES["hooks"],
@@ -151,10 +120,6 @@ def _serialize_lattice_assets(lat, storage_path: str) -> LatticeAssets:
         workflow_function_string=workflow_func_str_asset,
         doc=docstring_asset,
         inputs=inputs_asset,
-        named_args=named_args_asset,
-        named_kwargs=named_kwargs_asset,
-        cova_imports=cova_imports_asset,
-        lattice_imports=lattice_imports_asset,
         hooks=hooks_asset,
     )
 
@@ -166,20 +131,12 @@ def _deserialize_lattice_assets(assets: LatticeAssets) -> dict:
     )
     doc = load_asset(assets.doc, ASSET_TYPES["doc"])
     inputs = load_asset(assets.inputs, ASSET_TYPES["inputs"])
-    named_args = load_asset(assets.named_args, ASSET_TYPES["named_args"])
-    named_kwargs = load_asset(assets.named_kwargs, ASSET_TYPES["named_kwargs"])
-    cova_imports = load_asset(assets.cova_imports, ASSET_TYPES["cova_imports"])
-    lattice_imports = load_asset(assets.lattice_imports, ASSET_TYPES["lattice_imports"])
     hooks = load_asset(assets.hooks, ASSET_TYPES["hooks"])
     return {
         "workflow_function": workflow_function,
         "workflow_function_string": workflow_function_string,
         "__doc__": doc,
         "inputs": inputs,
-        "named_args": named_args,
-        "named_kwargs": named_kwargs,
-        "cova_imports": cova_imports,
-        "lattice_imports": lattice_imports,
         "metadata": {
             "hooks": hooks,
         },
@@ -194,12 +151,10 @@ def _get_lattice_custom_assets(lat: Lattice) -> Dict[str, AssetSchema]:
 def serialize_lattice(lat, storage_path: str) -> LatticeSchema:
     meta = _serialize_lattice_metadata(lat)
     assets = _serialize_lattice_assets(lat, storage_path)
-    custom_assets = _get_lattice_custom_assets(lat)
+    assets._custom = _get_lattice_custom_assets(lat)
     tg = serialize_transport_graph(lat.transport_graph, storage_path)
 
-    return LatticeSchema(
-        metadata=meta, assets=assets, custom_assets=custom_assets, transport_graph=tg
-    )
+    return LatticeSchema(metadata=meta, assets=assets, transport_graph=tg)
 
 
 def deserialize_lattice(model: LatticeSchema) -> Lattice: