Documentation update

DESCRIPTION

@@ -1,51 +1,51 @@
-Package: MorphoRegions
-Type: Package
-Title: Analysis of Regionalization Patterns in Serially Homologous Structures
-Version: 0.1.0
-Authors@R: c(
-  person("Amandine", "Gillet", role = c("cre", "aut"),
-         email = "[email protected]", 
-         comment = c(ORCID = "0000-0001-9763-6061")),
-  person("Katrina", "Jones", role = c("aut"), 
-         email = "[email protected]",
-	       comment = c(ORCID="0000-0003-1088-0497")),
-  person("Noah", "Greifer", role = c("aut"), 
-         email = "[email protected]",
-	       comment = c(ORCID="0000-0003-3067-7154")),
-  person("Stephanie", "Pierce", role = c("aut"),
-         email = "[email protected]", 
-         comment = c(ORCID = "0000-0003-0717-1841"))
-  )
-Description: Computes the optimal number of regions (or subdivisions) and 
-    their position in serial structures without a priori assumptions and to visualize 
-    the results. After reducing data dimensionality with the built-in function for
-    data ordination, regions are fitted as segmented linear regressions
-    along the serial structure. Every region boundary
-    position and increasing number of regions are iteratively fitted and
-    the best model (number of regions and boundary positions) is selected
-    with an information criterion. This package expands on the previous
-    'regions' package (Jones et al., Science 2018) with improved
-    computation and more fitting and plotting options.
-License: GPL (>= 2)
-Encoding: UTF-8
-Depends: 
-    R (>= 4.0.0)
-Imports:
-    stats, parallel, utils, grDevices,
-    RColorBrewer (>= 1.1-3),
-    cluster (>= 2.1.4),
-    scales (>= 1.3.0),
-    ggplot2 (>= 3.5.1),
-    chk (>= 0.9.0),
-    pbapply (>= 1.7-2)
-Suggests:
-    viridisLite,
-    patchwork (>= 1.1.0),
-    knitr,
-    rmarkdown
-VignetteBuilder: knitr
-LazyData: true
-Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.3.1
-URL: https://aagillet.github.io/MorphoRegions/, https://github.com/aagillet/MorphoRegions
-BugReports: https://github.com/aagillet/MorphoRegions/issues
+Package: MorphoRegions
+Type: Package
+Title: Analysis of Regionalization Patterns in Serially Homologous Structures
+Version: 0.1.0
+Authors@R: c(
+  person("Amandine", "Gillet", role = c("cre", "aut"),
+         email = "[email protected]", 
+         comment = c(ORCID = "0000-0001-9763-6061")),
+  person("Katrina", "Jones", role = c("aut"), 
+         email = "[email protected]",
+	       comment = c(ORCID="0000-0003-1088-0497")),
+  person("Noah", "Greifer", role = c("aut"), 
+         email = "[email protected]",
+	       comment = c(ORCID="0000-0003-3067-7154")),
+  person("Stephanie", "Pierce", role = c("aut"),
+         email = "[email protected]", 
+         comment = c(ORCID = "0000-0003-0717-1841"))
+  )
+Description: Computes the optimal number of regions (or subdivisions) and 
+    their position in serial structures without a priori assumptions and to visualize 
+    the results. After reducing data dimensionality with the built-in function for
+    data ordination, regions are fitted as segmented linear regressions
+    along the serial structure. Every region boundary
+    position and increasing number of regions are iteratively fitted and
+    the best model (number of regions and boundary positions) is selected
+    with an information criterion. This package expands on the previous
+    'regions' package (Jones et al., Science 2018) with improved
+    computation and more fitting and plotting options.
+License: GPL (>= 2)
+Encoding: UTF-8
+Depends: 
+    R (>= 4.0.0)
+Imports:
+    stats, parallel, utils, grDevices,
+    RColorBrewer (>= 1.1-3),
+    cluster (>= 2.1.4),
+    scales (>= 1.3.0),
+    ggplot2 (>= 3.5.1),
+    chk (>= 0.9.0),
+    pbapply (>= 1.7-2)
+Suggests:
+    viridisLite,
+    patchwork (>= 1.1.0),
+    knitr,
+    rmarkdown
+VignetteBuilder: knitr
+LazyData: true
+Roxygen: list(markdown = TRUE)
+RoxygenNote: 7.3.2
+URL: https://aagillet.github.io/MorphoRegions/, https://github.com/aagillet/MorphoRegions
+BugReports: https://github.com/aagillet/MorphoRegions/issues