AMICI v0.11.26
New features:
- Import of BioNetGenLanguage (BNGL) models by @FFroehlich in #1709
- Added support for observable-dependent sigmas by @dweindl, @FFroehlich in #1692
- Added support for pysb local functions by @FFroehlich in #1666
- Added experimental support for conservation laws for non-constant species to SBML import: conservation laws for non-constant species
by @stephanmg, @dweindl in #1669
Enable this feature by setting environment variableAMICI_EXPERIMENTAL_SBML_NONCONST_CLS
to any value- Allow using states eliminated by conservation laws to be used in root functions by @dweindl in #1677
- Added support for parameter-dependent conservation laws by @dweindl, @FFroehlich in #1678
- Added optional caching for symbolic simplifications in ODE export by @dilpath in #1672
- Added CLI option
--no-sensitivities
toamici_import_petab
by @dweindl in #1688
Fixes:
- SBML import: Raise in case of nested observables by @dweindl in #1690
- Sympy 1.10 compatibility by @dweindl in #1694
Full Changelog: v0.11.25...v0.11.26