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Bump version number, update changelog
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dweindl committed Apr 8, 2022
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36 changes: 35 additions & 1 deletion CHANGELOG.md
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## v0.X Series

### v0.11.28 (2022-04-08)

New features:
* Added `Solver.setSteadyStateToleranceFactor` and
`Solver.setSteadyStateSensiToleranceFactor` to specify a steady state
tolerance factor by @dilpath in https://github.com/AMICI-dev/AMICI/pull/1758

**NOTE: This also relaxed the default steady state (sensitivity)**
**tolerances by a factor of 100.**
* Added support for `pathlib.Path` by @dweindl in
https://github.com/AMICI-dev/AMICI/pull/1769
* Allow specifying initial timepoint with `ExpData` by @dilpath in
https://github.com/AMICI-dev/AMICI/pull/1776

Performance:
* Speedup for models with conservation laws by @FFroehlich in
https://github.com/AMICI-dev/AMICI/pull/1765
* Improved efficiency of newton step convergence check by @FFroehlich in
https://github.com/AMICI-dev/AMICI/pull/1775

Fixes:
* Fixed deprecation warning for pandas.DataFrame.append in
`rdatas_to_measurement_df` by @dweindl in
https://github.com/AMICI-dev/AMICI/pull/1770
* Fixed Rule-target handling in PEtab import by @dweindl in
https://github.com/AMICI-dev/AMICI/pull/1753

Removed functionality:
* Removed long deprecated `sbml2amici` arguments `modelName`
and `constantParameters` by @dweindl in
https://github.com/AMICI-dev/AMICI/pull/1774

**Full Changelog**:
https://github.com/AMICI-dev/AMICI/compare/v0.11.27...v0.11.28

### v0.11.27 (2022-04-04)

New features:
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* Optional parallel computation of derivatives during model import by @dweindl
in https://github.com/AMICI-dev/AMICI/pull/1740
* Sparsify jacobian by @FFroehlich in https://github.com/AMICI-dev/AMICI/pull/1766
* Speedup for models with conservation laws by @FFroehlich in https://github.com/AMICI-dev/AMICI/pull/1765
* Speedup conservation law computation by @FFroehlich in
https://github.com/AMICI-dev/AMICI/pull/1754
* Exploit stoichiometric matrix in pysb import by @FFroehlich in
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2 changes: 1 addition & 1 deletion version.txt
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0.11.27
0.11.28

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