SMaHT ingestion work. Moved structured_data.py from smaht-portal to here. (Tests still in smaht-portal though for now). #1195
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| # dcicutils GA Workflow | |
| name: CI | |
| # Controls when the action will run. | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the master branch | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # This workflow contains a single job called "build" | |
| build: | |
| name: Test dcicutils with Python ${{ matrix.python_version }} | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| python_version: [3.8, 3.9, 3.11] | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python_version }} | |
| - name: Install Deps | |
| run: | | |
| sudo apt install redis-server | |
| sudo ln -s /usr/bin/redis-server /usr/local/bin/redis-server | |
| sudo ln -s /usr/bin/redis-cli /usr/local/bin/redis-cli | |
| make build | |
| # show loaded versions of various poetry-related libraries | |
| pip freeze --all | egrep '(pip|poetry(.[a-z]+)?|tomlkit)==' | |
| - name: QA | |
| env: | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| S3_ENCRYPT_KEY: ${{ secrets.S3_ENCRYPT_KEY }} | |
| GLOBAL_ENV_BUCKET: foursight-envs | |
| run: | | |
| make test-for-ga | |
| - name: Coveralls | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| if: ${{ matrix.python_version == '3.9' }} | |
| run: | | |
| pip install coveralls | |
| poetry run coveralls --service=github |