Add support for HIC v9 files, weight column and bump version #69
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Added function to write hic normalizations to "weight" column in cooler file. VC, VC_SQRT and KR are inverted before put into weights. This is in line with the cooler-handling: https://github.com/open2c/cooler/blob/742e5c2adf6b6339ad6fcdb3e0a42449ee4e4675/src/cooler/api.py#L29
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In the last two commits, support for the weight-column in conversions was added as well, addressing issue #63. The normalization technique used for the weight column can be specified with the -N flag. Values for normalizations KR, VC, VC_SQRT, SCALE or whatever used, are inverted. This is because Cooler itself uses inverted values in the bin columns if the columns are named KR, VC, VC_SQRT |
VonAlphaBisZulu
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VonAlphaBisZulu
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Anyone looked into this? |
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Addressing Issues #59 and #60. Possibly, also issues #56 and #57.
Tested with hic files in test_data to make sure the update doesn't break anything.