Merge pull request #109 from 4dn-dcic/upd_py3_11

Updates to use python versions 3.8 - 3.11

.github/workflows/main-publish.yml

@@ -18,17 +18,17 @@ jobs:
   # This workflow contains a single job called "build"
   build:
     # The type of runner that the job will run on
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-22.04
 
     # Steps represent a sequence of tasks that will be executed as part of the job
     steps:
       # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
       - uses: actions/setup-python@v2
         with:
-          python-version: 3.7
+          python-version: 3.11
       - name: Install Python dependencies for publish
-        run: python -m pip install dcicutils==7.5.1
+        run: python -m pip install dcicutils==8.0.0
       - name: Publish
         env:
           PYPI_USER: ${{ secrets.PYPI_USER }}

.github/workflows/main.yml

@@ -17,29 +17,30 @@ on:
 jobs:
   # This workflow contains a single job called "build"
   build:
+    name: Test dcicwrangling with Python ${{ matrix.python_version }}
     # The type of runner that the job will run on
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-22.04
     strategy:
       matrix:
-        python_version: [3.7, 3.8]
+        python_version: ['3.8', '3.9', '3.10', '3.11']
 
     # Steps represent a sequence of tasks that will be executed as part of the job
     steps:
       # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
       - uses: actions/setup-python@v2
         with:
           python-version: ${{ matrix.python_version }}
 
       - name: Install Deps
         run: |
-          pip install poetry coveralls codacy-coverage
+          make build
+          pip install coveralls codacy-coverage
 
       - name: QA
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
         run: |
-          poetry install
           poetry run coverage run --source=dcicwrangling -m pytest -vv tests
           poetry run coveralls --service=github
 

Makefile

@@ -7,7 +7,7 @@ clear-poetry-cache:  # clear poetry/pypi cache. for user to do explicitly, never
 	poetry cache clear pypi --all
 
 configure:  # does any pre-requisite installs
-	pip install poetry==1.3.2
+	pip install poetry==1.4.2
 
 lint:
 	flake8 dcicwrangling

notebooks/useful_notebooks/12_geo_submission.ipynb

@@ -664,7 +664,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },