From f4ab6cbd21768ab502835f5b325fc80ed5391c3a Mon Sep 17 00:00:00 2001 From: Zoe Anne Dyson Date: Mon, 15 Nov 2021 17:58:05 +0000 Subject: [PATCH] Update README.md --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index cf5a173..4ccd5eb 100644 --- a/README.md +++ b/README.md @@ -7,9 +7,9 @@ GHRU SNV Quality Stats Generator provides summaries of high and low quality SNV #### Example output: ``` column -t example_snv_qc_summary.tsv -File PASS LowQual Percent_LowQual Hets Percent_Hets Hets_SB Percent_Hets_SB Non-excluded_PASS Non-excluded_LowQual Non-excluded_percent_LowQual Non-excluded_Hets Non-excluded_percent_Hets -23584_2#44.filtered.bcf 782 202 25.831202046 17 2.17391304348 4 0.511508951407 485 7 1.44329896907 2 0.412371134021 -B457_merged.filtered.bcf 533 184 34.521575985 27 5.06566604128 8 1.5009380863 374 44 11.7647058824 7 1.87165775401 +File PASS LowQual Percent_LowQual Hets Percent_Hets Non-excluded_PASS Non-excluded_LowQual Non-excluded_percent_LowQual Non-excluded_Hets Non-excluded_percent_Hets +23584_2#44.filtered.bcf 782 202 25.831202046 17 2.17391304348 485 7 1.44329896907 2 0.412371134021 +B457_merged.filtered.bcf 533 184 34.521575985 27 5.06566604128 374 44 11.7647058824 7 1.87165775401 ``` **CT18_repeats_phages_excluded_regions.tsv** - Phage and repeat regions normally excluded from phylogenetic analysis of S. Typhi (CT18: accession no. AL513382).