From 8baac2fc771e2020af66bd277b145dac402140c8 Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Wed, 31 Jul 2024 20:41:08 +0200
Subject: [PATCH 01/23] Fix pre-commit

---
 .pre-commit-config.yaml | 52 ++++++++++++++---------------------------
 1 file changed, 17 insertions(+), 35 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 806f2fd..61f5542 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,44 +1,26 @@
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.0.1
+    rev: v4.4.0
     hooks:
       - id: check-docstring-first
       - id: end-of-file-fixer
       - id: trailing-whitespace
-  - repo: https://github.com/asottile/setup-cfg-fmt
-    rev: v1.20.0
-    hooks:
-      - id: setup-cfg-fmt
-  - repo: https://github.com/PyCQA/flake8
-    rev: 4.0.1
-    hooks:
-      - id: flake8
-        additional_dependencies: [flake8-typing-imports==1.7.0]
-  - repo: https://github.com/myint/autoflake
-    rev: v1.4
-    hooks:
-      - id: autoflake
-        args: ["--in-place", "--remove-all-unused-imports"]
-  - repo: https://github.com/PyCQA/isort
-    rev: 5.10.1
-    hooks:
-      - id: isort
+
   - repo: https://github.com/psf/black
-    rev: 21.11b1
+    rev: 23.7.0
     hooks:
       - id: black
-  - repo: https://github.com/asottile/pyupgrade
-    rev: v2.29.1
-    hooks:
-      - id: pyupgrade
-        args: [--py37-plus, --keep-runtime-typing]
-  - repo: https://github.com/tlambert03/napari-plugin-checks
-    rev: v0.2.0
-    hooks:
-      - id: napari-plugin-checks
-  # https://mypy.readthedocs.io/en/stable/introduction.html
-  # you may wish to add this as well!
-  # - repo: https://github.com/pre-commit/mirrors-mypy
-  #   rev: v0.910-1
-  #   hooks:
-  #     - id: mypy
+
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.0.282
+    hooks:
+      - id: ruff
+
+  - repo: https://github.com/pre-commit/mirrors-mypy
+    rev: v1.4.1
+    hooks:
+      - id: mypy
+        additional_dependencies:
+          - types-toml
+          - types-PyYAML
+        exclude: npe2/implements.pyi|_docs/render.py

From 1f90507fda2c1c22c9911d8952662eb02ee06428 Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Wed, 31 Jul 2024 20:42:57 +0200
Subject: [PATCH 02/23] No bare except

---
 src/napari_pymeshlab/_widget.py | 234 +++++++++++++++++---------------
 1 file changed, 127 insertions(+), 107 deletions(-)

diff --git a/src/napari_pymeshlab/_widget.py b/src/napari_pymeshlab/_widget.py
index 5141f7f..183e59c 100644
--- a/src/napari_pymeshlab/_widget.py
+++ b/src/napari_pymeshlab/_widget.py
@@ -1,12 +1,3 @@
-"""
-This module is an example of a barebones QWidget plugin for napari
-
-It implements the Widget specification.
-see: https://napari.org/plugins/stable/npe2_manifest_specification.html
-
-Replace code below according to your needs.
-"""
-from qtpy.QtWidgets import QWidget, QHBoxLayout, QPushButton
 from magicgui import magic_factory
 from napari.layers import Points
 from napari.types import LayerDataTuple, SurfaceData
@@ -14,44 +5,60 @@
 import pymeshlab as ml
 from enum import Enum
 
+
 @magic_factory
-def screened_poisson_reconstruction(points_layer: Points, n_neighbors: int = 10, 
-                     smooth_iter: int = 0, flip: bool = False, 
-                     viewpos: np.ndarray = [0,0,0], depth: int = 8,
-                     full_depth: int = 5, cg_depth: int = 0, scale: float = 1.1, 
-                     samples_per_node: float = 1.5, point_weight: float = 4, 
-                     iters: int = 8, confidence: bool = False, 
-                     preclean: bool = False) -> LayerDataTuple:
+def screened_poisson_reconstruction(
+    points_layer: Points,
+    n_neighbors: int = 10,
+    smooth_iter: int = 0,
+    flip: bool = False,
+    viewpos: np.ndarray = [0, 0, 0],
+    depth: int = 8,
+    full_depth: int = 5,
+    cg_depth: int = 0,
+    scale: float = 1.1,
+    samples_per_node: float = 1.5,
+    point_weight: float = 4,
+    iters: int = 8,
+    confidence: bool = False,
+    preclean: bool = False,
+) -> LayerDataTuple:
     """
     Run screened poisson reconstruction on a set of points, using pymeshlab.
     """
 
     mesh = ml.Mesh(points_layer.data)
-    
+
     ms = ml.MeshSet()
     ms.add_mesh(mesh)
 
     # compute normals
-    ms.compute_normals_for_point_sets(k=n_neighbors,  # number of neighbors
-                                      smoothiter=smooth_iter,
-                                      flipflag=flip,
-                                      viewpos=viewpos)
+    ms.compute_normals_for_point_sets(
+        k=n_neighbors,  # number of neighbors
+        smoothiter=smooth_iter,
+        flipflag=flip,
+        viewpos=viewpos,
+    )
     # run SPR
-    ms.surface_reconstruction_screened_poisson(visiblelayer=False,
-                                               depth=depth,
-                                               fulldepth=full_depth,
-                                               cgdepth=cg_depth,
-                                               scale=scale,
-                                               samplespernode=samples_per_node,
-                                               pointweight=point_weight,
-                                               iters=iters,
-                                               confidence=confidence,
-                                               preclean=preclean)
-    
-    data = (ms.current_mesh().vertex_matrix(), 
-            ms.current_mesh().face_matrix(), 
-            ms.current_mesh().vertex_color_matrix().T)
-    
+    ms.surface_reconstruction_screened_poisson(
+        visiblelayer=False,
+        depth=depth,
+        fulldepth=full_depth,
+        cgdepth=cg_depth,
+        scale=scale,
+        samplespernode=samples_per_node,
+        pointweight=point_weight,
+        iters=iters,
+        confidence=confidence,
+        preclean=preclean,
+    )
+
+    data = (
+        ms.current_mesh().vertex_matrix(),
+        ms.current_mesh().face_matrix(),
+        ms.current_mesh().vertex_color_matrix().T,
+    )
+
     return [(data, {"name": f"Reconstructed {points_layer.name}"}, "surface")]
 
 
@@ -76,14 +83,15 @@ def convex_hull(surface: SurfaceData) -> SurfaceData:
     ..[0] https://pymeshlab.readthedocs.io/en/0.1.9/tutorials/apply_filter.html
     """
     import pymeshlab
+
     mesh = pymeshlab.Mesh(surface[0], surface[1])
     ms = pymeshlab.MeshSet()
     ms.add_mesh(mesh)
     ms.set_current_mesh(0)
-    
-    try: 
+
+    try:
         ms.convex_hull()
-    except:
+    except AttributeError:
         ms.generate_convex_hull()
 
     mesh = ms.mesh(1)
@@ -99,6 +107,7 @@ def convex_hull(surface: SurfaceData) -> SurfaceData:
 def _laplacian_smooth(surface: SurfaceData, step_smooth_num: int = 10) -> SurfaceData:
     return laplacian_smooth(surface, step_smooth_num)
 
+
 def laplacian_smooth(surface: SurfaceData, step_smooth_num: int = 10) -> SurfaceData:
     """
 
@@ -116,16 +125,17 @@ def laplacian_smooth(surface: SurfaceData, step_smooth_num: int = 10) -> Surface
     ..[0] https://pymeshlab.readthedocs.io/en/0.1.9/filter_list.html#laplacian_smooth
     """
     import pymeshlab
+
     mesh = pymeshlab.Mesh(surface[0], surface[1])
     ms = pymeshlab.MeshSet()
     ms.add_mesh(mesh)
     ms.set_current_mesh(0)
-    
-    try: 
+
+    try:
         ms.laplacian_smooth(stepsmoothnum=step_smooth_num)
-    except: 
+    except AttributeError:
         ms.apply_coord_laplacian_smoothing(stepsmoothnum=step_smooth_num)
-        
+
     mesh = ms.mesh(0)
 
     faces = np.asarray(mesh.polygonal_face_list())
@@ -136,19 +146,21 @@ def laplacian_smooth(surface: SurfaceData, step_smooth_num: int = 10) -> Surface
 
 
 @magic_factory
-def _taubin_smooth(surface: SurfaceData,
-                  lambda_: float = 0.5,
-                  mu: float = -0.53,
-                  step_smooth_num: int = 10
-                  ) -> SurfaceData:
+def _taubin_smooth(
+    surface: SurfaceData,
+    lambda_: float = 0.5,
+    mu: float = -0.53,
+    step_smooth_num: int = 10,
+) -> SurfaceData:
     return taubin_smooth(surface, lambda_, mu, step_smooth_num)
 
 
-def taubin_smooth(surface: SurfaceData,
-                  lambda_: float = 0.5,
-                  mu: float = -0.53,
-                  step_smooth_num: int = 10
-                  ) -> SurfaceData:
+def taubin_smooth(
+    surface: SurfaceData,
+    lambda_: float = 0.5,
+    mu: float = -0.53,
+    step_smooth_num: int = 10,
+) -> SurfaceData:
     """Smooth a surface using Taubin's method [1]
 
     Parameters
@@ -165,7 +177,8 @@ def taubin_smooth(surface: SurfaceData,
     See Also
     --------
     ..[0] https://pymeshlab.readthedocs.io/en/0.1.9/filter_list.html#taubin_smooth
-    ..[1] "Gabriel Taubin" A signal processing approach to fair surface design" SIGGRAPH 1995 doi:10.1145/218380.218473
+    ..[1] "Gabriel Taubin" A signal processing approach to fair surface design"
+          SIGGRAPH 1995 doi:10.1145/218380.218473
     """
     import pymeshlab
 
@@ -173,18 +186,14 @@ def taubin_smooth(surface: SurfaceData,
     ms = pymeshlab.MeshSet()
     ms.add_mesh(mesh)
     ms.set_current_mesh(0)
-    
-    try: 
-        ms.taubin_smooth(lambda_=lambda_,
-                        mu=mu,
-                        stepsmoothnum=step_smooth_num
-                        )
-    
-    except:
-        ms.apply_coord_taubin_smoothing(lambda_=lambda_,
-                        mu=mu,
-                        stepsmoothnum=step_smooth_num
-                        )
+
+    try:
+        ms.taubin_smooth(lambda_=lambda_, mu=mu, stepsmoothnum=step_smooth_num)
+
+    except AttributeError:
+        ms.apply_coord_taubin_smoothing(
+            lambda_=lambda_, mu=mu, stepsmoothnum=step_smooth_num
+        )
 
     mesh = ms.mesh(0)
 
@@ -196,15 +205,15 @@ def taubin_smooth(surface: SurfaceData,
 
 
 @magic_factory
-def _simplification_clustering_decimation(surface: SurfaceData,
-                                         threshold_percentage: float = 1
-                                         ) -> SurfaceData:
+def _simplification_clustering_decimation(
+    surface: SurfaceData, threshold_percentage: float = 1
+) -> SurfaceData:
     return simplification_clustering_decimation(surface, threshold_percentage)
 
 
-def simplification_clustering_decimation(surface: SurfaceData,
-                                         threshold_percentage: float = 1
-                                         ) -> SurfaceData:
+def simplification_clustering_decimation(
+    surface: SurfaceData, threshold_percentage: float = 1
+) -> SurfaceData:
     """Cluster points of a surface to make it less complex
 
     Parameters
@@ -227,11 +236,15 @@ def simplification_clustering_decimation(surface: SurfaceData,
     ms = pymeshlab.MeshSet()
     ms.add_mesh(mesh)
     ms.set_current_mesh(0)
-    
-    try: 
-        ms.simplification_clustering_decimation(threshold=pymeshlab.Percentage(threshold_percentage))
-    except:
-        ms.meshing_decimation_clustering(threshold=pymeshlab.PercentageValue(threshold_percentage))
+
+    try:
+        ms.simplification_clustering_decimation(
+            threshold=pymeshlab.Percentage(threshold_percentage)
+        )
+    except AttributeError:
+        ms.meshing_decimation_clustering(
+            threshold=pymeshlab.PercentageValue(threshold_percentage)
+        )
     mesh = ms.mesh(0)
 
     faces = np.asarray(mesh.polygonal_face_list())
@@ -242,31 +255,40 @@ def simplification_clustering_decimation(surface: SurfaceData,
 
 
 class CurvatureType(Enum):
-    mean = 'Mean'
-    gauss = 'Gauss'
-    k1 = 'K1'
-    k2 = 'K2'
-    approxmean = 'ApproxMean'
+    mean = "Mean"
+    gauss = "Gauss"
+    k1 = "K1"
+    k2 = "K2"
+    approxmean = "ApproxMean"
 
 
 @magic_factory
-def _colorize_curvature_apss(surface: SurfaceData,
-                            filter_scale: float = 2,
-                            projection_accuracy: float = 0.0001,
-                            max_projection_iterations: int = 15,
-                            spherical_parameter: float = 1,
-                            curvature_type: CurvatureType = CurvatureType.mean
-                            ) -> SurfaceData:
-    return _colorize_curvature_apss(surface, filter_scale, projection_accuracy, max_projection_iterations, spherical_parameter, curvature_type)
-
-
-def colorize_curvature_apss(surface: SurfaceData,
-                            filter_scale: float = 2,
-                            projection_accuracy: float = 0.0001,
-                            max_projection_iterations: int = 15,
-                            spherical_parameter: float = 1,
-                            curvature_type: CurvatureType = CurvatureType.mean
-                            ) -> SurfaceData:
+def _colorize_curvature_apss(
+    surface: SurfaceData,
+    filter_scale: float = 2,
+    projection_accuracy: float = 0.0001,
+    max_projection_iterations: int = 15,
+    spherical_parameter: float = 1,
+    curvature_type: CurvatureType = CurvatureType.mean,
+) -> SurfaceData:
+    return _colorize_curvature_apss(
+        surface,
+        filter_scale,
+        projection_accuracy,
+        max_projection_iterations,
+        spherical_parameter,
+        curvature_type,
+    )
+
+
+def colorize_curvature_apss(
+    surface: SurfaceData,
+    filter_scale: float = 2,
+    projection_accuracy: float = 0.0001,
+    max_projection_iterations: int = 15,
+    spherical_parameter: float = 1,
+    curvature_type: CurvatureType = CurvatureType.mean,
+) -> SurfaceData:
     """Colorize curvature
 
     Parameters
@@ -288,24 +310,24 @@ def colorize_curvature_apss(surface: SurfaceData,
     ms = pymeshlab.MeshSet()
     ms.add_mesh(mesh)
     ms.set_current_mesh(0)
-    try: 
+    try:
         ms.compute_curvature_and_color_apss_per_vertex(
             filterscale=filter_scale,
             projectionaccuracy=projection_accuracy,
             maxprojectioniters=max_projection_iterations,
             sphericalparameter=spherical_parameter,
-            curvaturetype=curvature_type.value
+            curvaturetype=curvature_type.value,
         )
-    
-    except: 
+
+    except AttributeError:
         ms.colorize_curvature_apss(
             filterscale=filter_scale,
             projectionaccuracy=projection_accuracy,
             maxprojectioniters=max_projection_iterations,
             sphericalparameter=spherical_parameter,
-            curvaturetype=curvature_type.value
+            curvaturetype=curvature_type.value,
         )
-        
+
     mesh = ms.mesh(0)
 
     faces = np.asarray(mesh.polygonal_face_list())
@@ -313,5 +335,3 @@ def colorize_curvature_apss(surface: SurfaceData,
     values = np.asarray(mesh.vertex_color_array())
 
     return (vertices, faces, values)
-
-

From 1d765704df8ac15997e7445bcf0055f2f5e0004f Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Wed, 31 Jul 2024 20:44:49 +0200
Subject: [PATCH 03/23] Update workflow to modern versions

---
 .github/workflows/test_and_deploy.yml | 8 +++-----
 1 file changed, 3 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/test_and_deploy.yml b/.github/workflows/test_and_deploy.yml
index 84536d2..0b8ad6e 100644
--- a/.github/workflows/test_and_deploy.yml
+++ b/.github/workflows/test_and_deploy.yml
@@ -1,9 +1,8 @@
 # This workflows will upload a Python Package using Twine when a release is created
-# For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries
 
 name: tests
 
-on: 
+on:
   push:
     branches:
       - main
@@ -23,7 +22,7 @@ jobs:
     strategy:
       matrix:
         platform: [ubuntu-latest, windows-latest, macos-latest]
-        python-version: [3.7, 3.8, 3.9]
+        python-version: [3.9, 3.10, 3.11, 3.12]
 
     steps:
       - uses: actions/checkout@v2
@@ -70,7 +69,7 @@ jobs:
 
   deploy:
     # this will run when you have tagged a commit, starting with "v*"
-    # and requires that you have put your twine API key in your 
+    # and requires that you have put your twine API key in your
     # github secrets (see readme for details)
     needs: [test]
     runs-on: ubuntu-latest
@@ -93,4 +92,3 @@ jobs:
           git tag
           python setup.py sdist bdist_wheel
           twine upload dist/*
-

From f369863820b0a9744ade0a7681f2ba238964607b Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Wed, 31 Jul 2024 21:01:44 +0200
Subject: [PATCH 04/23] Upgrade actions

---
 .github/workflows/test_and_deploy.yml | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/test_and_deploy.yml b/.github/workflows/test_and_deploy.yml
index 0b8ad6e..c149301 100644
--- a/.github/workflows/test_and_deploy.yml
+++ b/.github/workflows/test_and_deploy.yml
@@ -25,10 +25,10 @@ jobs:
         python-version: [3.9, 3.10, 3.11, 3.12]
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
 
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
 
@@ -58,14 +58,14 @@ jobs:
 
       # this runs the platform-specific tests declared in tox.ini
       - name: Test with tox
-        uses: GabrielBB/xvfb-action@v1
+        uses: coactions/setup-xvfb@v1
         with:
           run: tox
         env:
           PLATFORM: ${{ matrix.platform }}
 
       - name: Coverage
-        uses: codecov/codecov-action@v2
+        uses: codecov/codecov-action@v4
 
   deploy:
     # this will run when you have tagged a commit, starting with "v*"
@@ -75,9 +75,9 @@ jobs:
     runs-on: ubuntu-latest
     if: contains(github.ref, 'tags')
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
       - name: Set up Python
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v5
         with:
           python-version: "3.x"
       - name: Install dependencies

From 5874437e057285bf8188e98c6d34a45f1f2e2734 Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Wed, 31 Jul 2024 21:04:39 +0200
Subject: [PATCH 05/23] Fix versions

---
 .github/workflows/test_and_deploy.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/test_and_deploy.yml b/.github/workflows/test_and_deploy.yml
index c149301..6e194cc 100644
--- a/.github/workflows/test_and_deploy.yml
+++ b/.github/workflows/test_and_deploy.yml
@@ -22,7 +22,7 @@ jobs:
     strategy:
       matrix:
         platform: [ubuntu-latest, windows-latest, macos-latest]
-        python-version: [3.9, 3.10, 3.11, 3.12]
+        python-version: ["3.9", "3.10", "3.11", "3.12"]
 
     steps:
       - uses: actions/checkout@v4

From 19412ac1b5402b82963c5677fedb7c131669bf9a Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Wed, 31 Jul 2024 23:11:38 +0200
Subject: [PATCH 06/23] Switch to pytest

---
 .github/workflows/test_and_deploy.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/test_and_deploy.yml b/.github/workflows/test_and_deploy.yml
index 6e194cc..2c0f662 100644
--- a/.github/workflows/test_and_deploy.yml
+++ b/.github/workflows/test_and_deploy.yml
@@ -54,13 +54,13 @@ jobs:
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
-          pip install setuptools tox tox-gh-actions
+          pip install setuptools pytest
 
       # this runs the platform-specific tests declared in tox.ini
-      - name: Test with tox
+      - name: Test with pytest
         uses: coactions/setup-xvfb@v1
         with:
-          run: tox
+          run: pytest
         env:
           PLATFORM: ${{ matrix.platform }}
 

From 8b0382ce5c03345eec0e0ac5cd2eeaa635a2b7c3 Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Wed, 31 Jul 2024 23:14:56 +0200
Subject: [PATCH 07/23] Drop linux/xvfb

---
 .github/workflows/test_and_deploy.yml | 27 ++-------------------------
 1 file changed, 2 insertions(+), 25 deletions(-)

diff --git a/.github/workflows/test_and_deploy.yml b/.github/workflows/test_and_deploy.yml
index 2c0f662..4627970 100644
--- a/.github/workflows/test_and_deploy.yml
+++ b/.github/workflows/test_and_deploy.yml
@@ -31,26 +31,6 @@ jobs:
         uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
-
-      # these libraries enable testing on Qt on linux
-      - name: Install Linux libraries
-        if: runner.os == 'Linux'
-        run: |
-          sudo apt-get install -y libdbus-1-3 libxkbcommon-x11-0 libxcb-icccm4 \
-            libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 \
-            libxcb-xinerama0 libxcb-xinput0 libxcb-xfixes0
-
-      # strategy borrowed from vispy for installing opengl libs on windows
-      - name: Install Windows OpenGL
-        if: runner.os == 'Windows'
-        run: |
-          git clone --depth 1 https://github.com/pyvista/gl-ci-helpers.git
-          powershell gl-ci-helpers/appveyor/install_opengl.ps1
-
-      # note: if you need dependencies from conda, considering using
-      # setup-miniconda: https://github.com/conda-incubator/setup-miniconda
-      # and
-      # tox-conda: https://github.com/tox-dev/tox-conda
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
@@ -58,11 +38,8 @@ jobs:
 
       # this runs the platform-specific tests declared in tox.ini
       - name: Test with pytest
-        uses: coactions/setup-xvfb@v1
-        with:
-          run: pytest
-        env:
-          PLATFORM: ${{ matrix.platform }}
+        run: |
+          python3 -m pytest --cov=./ --cov-report=xml
 
       - name: Coverage
         uses: codecov/codecov-action@v4

From 40803fc69424df138782cc912ea3b0abb18b0376 Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Wed, 31 Jul 2024 23:16:18 +0200
Subject: [PATCH 08/23] Add pytest-cov

---
 .github/workflows/test_and_deploy.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/test_and_deploy.yml b/.github/workflows/test_and_deploy.yml
index 4627970..8192e91 100644
--- a/.github/workflows/test_and_deploy.yml
+++ b/.github/workflows/test_and_deploy.yml
@@ -34,7 +34,7 @@ jobs:
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
-          pip install setuptools pytest
+          pip install setuptools pytest pytest-cov
 
       # this runs the platform-specific tests declared in tox.ini
       - name: Test with pytest

From d69b151d480e7a21913132884f03c0b103bb7b24 Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Wed, 31 Jul 2024 23:17:52 +0200
Subject: [PATCH 09/23] Install dependencies

---
 .github/workflows/test_and_deploy.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/test_and_deploy.yml b/.github/workflows/test_and_deploy.yml
index 8192e91..837c84f 100644
--- a/.github/workflows/test_and_deploy.yml
+++ b/.github/workflows/test_and_deploy.yml
@@ -34,6 +34,7 @@ jobs:
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
+          pip install -e .
           pip install setuptools pytest pytest-cov
 
       # this runs the platform-specific tests declared in tox.ini

From ff06dcd8f0532c580aa030568c6f5163963b3d84 Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Wed, 31 Jul 2024 23:23:51 +0200
Subject: [PATCH 10/23] Don't cancel because of Mac

---
 .github/workflows/test_and_deploy.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/test_and_deploy.yml b/.github/workflows/test_and_deploy.yml
index 837c84f..19faf5b 100644
--- a/.github/workflows/test_and_deploy.yml
+++ b/.github/workflows/test_and_deploy.yml
@@ -21,7 +21,7 @@ jobs:
     runs-on: ${{ matrix.platform }}
     strategy:
       matrix:
-        platform: [ubuntu-latest, windows-latest, macos-latest]
+        platform: [ubuntu-latest, windows-latest] #, macos-latest]
         python-version: ["3.9", "3.10", "3.11", "3.12"]
 
     steps:

From 48877aa88583b25d40c560d5166f0f6db9c7a6be Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Wed, 31 Jul 2024 23:26:46 +0200
Subject: [PATCH 11/23] Update requirements

---
 requirements.txt | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/requirements.txt b/requirements.txt
index d067b15..70f7fae 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,4 +1,5 @@
 npe2
 numpy
 pymeshlab
--e .
+pyqt5
+magicgui[pyqt5]

From 8338d8beb144b79aab3da3ce756bdb35a0a222ee Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Wed, 31 Jul 2024 23:32:13 +0200
Subject: [PATCH 12/23] Update setup.cfg

---
 requirements.txt | 1 +
 setup.cfg        | 8 +++++---
 2 files changed, 6 insertions(+), 3 deletions(-)

diff --git a/requirements.txt b/requirements.txt
index 70f7fae..4b417e6 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -3,3 +3,4 @@ numpy
 pymeshlab
 pyqt5
 magicgui[pyqt5]
+-e .
diff --git a/setup.cfg b/setup.cfg
index 19a2c3e..b371506 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -41,14 +41,16 @@ install_requires =
     npe2
     numpy
     pymeshlab
+    pyqt5
+    magicgui[pyqt5]
 
 [options.packages.find]
 where = src
 
 [options.package_data]
-napari-pymeshlab = 
+napari-pymeshlab =
     napari.yaml
 
-[options.entry_points] 
-napari.manifest = 
+[options.entry_points]
+napari.manifest =
     napari-pymeshlab = napari_pymeshlab:napari.yaml

From c089d7e326c47e629333d1694c1e692c54e4e017 Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Wed, 31 Jul 2024 23:34:41 +0200
Subject: [PATCH 13/23] Fix requirements

---
 requirements.txt | 3 +--
 setup.cfg        | 3 +--
 2 files changed, 2 insertions(+), 4 deletions(-)

diff --git a/requirements.txt b/requirements.txt
index 4b417e6..2549d76 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,6 +1,5 @@
+napari
 npe2
 numpy
 pymeshlab
-pyqt5
-magicgui[pyqt5]
 -e .
diff --git a/setup.cfg b/setup.cfg
index b371506..c1fda0e 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -38,11 +38,10 @@ package_dir =
 
 # add your package requirements here
 install_requires =
+    napari
     npe2
     numpy
     pymeshlab
-    pyqt5
-    magicgui[pyqt5]
 
 [options.packages.find]
 where = src

From 58a615ecbd4bb1db29bd940075b07f049b12b183 Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Wed, 31 Jul 2024 23:37:47 +0200
Subject: [PATCH 14/23] Address deprecation

---
 src/napari_pymeshlab/_sample_data.py | 836 ++++++++++++++-------------
 1 file changed, 426 insertions(+), 410 deletions(-)

diff --git a/src/napari_pymeshlab/_sample_data.py b/src/napari_pymeshlab/_sample_data.py
index 7d4d603..98218cb 100644
--- a/src/napari_pymeshlab/_sample_data.py
+++ b/src/napari_pymeshlab/_sample_data.py
@@ -1,425 +1,441 @@
-from __future__ import annotations
-import numpy as np
-import pymeshlab as ml
-
 """
 Stanford bunny point cloud taken from Point Cloud Library
 https://github.com/PointCloudLibrary/pcl/blob/master/test/bunny.pcd
 """
-BUNNY = np.array([
-    [0.0054216,0.11349,0.040749],
-    [-0.0017447,0.11425,0.041273],
-    [-0.010661,0.11338,0.040916],
-    [0.026422,0.11499,0.032623],
-    [0.024545,0.12284,0.024255],
-    [0.034137,0.11316,0.02507],
-    [0.02886,0.11773,0.027037],
-    [0.02675,0.12234,0.017605],
-    [0.03575,0.1123,0.019109],
-    [0.015982,0.12307,0.031279],
-    [0.0079813,0.12438,0.032798],
-    [0.018101,0.11674,0.035493],
-    [0.0086687,0.11758,0.037538],
-    [0.01808,0.12536,0.026132],
-    [0.0080861,0.12866,0.02619],
-    [0.02275,0.12146,0.029671],
-    [-0.0018689,0.12456,0.033184],
-    [-0.011168,0.12376,0.032519],
-    [-0.0020063,0.11937,0.038104],
-    [-0.01232,0.11816,0.037427],
-    [-0.0016659,0.12879,0.026782],
-    [-0.011971,0.12723,0.026219],
-    [0.016484,0.12828,0.01928],
-    [0.0070921,0.13103,0.018415],
-    [0.0014615,0.13134,0.017095],
-    [-0.013821,0.12886,0.019265],
-    [-0.01725,0.11202,0.040077],
-    [-0.074556,0.13415,0.051046],
-    [-0.065971,0.14396,0.04109],
-    [-0.071925,0.14545,0.043266],
-    [-0.06551,0.13624,0.042195],
-    [-0.071112,0.13767,0.047518],
-    [-0.079528,0.13416,0.051194],
-    [-0.080421,0.14428,0.042793],
-    [-0.082672,0.1378,0.046806],
-    [-0.08813,0.13514,0.042222],
-    [-0.066325,0.12347,0.050729],
-    [-0.072399,0.12662,0.052364],
-    [-0.066091,0.11973,0.050881],
-    [-0.072012,0.11811,0.052295],
-    [-0.062433,0.12627,0.043831],
-    [-0.068326,0.12998,0.048875],
-    [-0.063094,0.11811,0.044399],
-    [-0.071301,0.11322,0.04841],
-    [-0.080515,0.12741,0.052034],
-    [-0.078179,0.1191,0.051116],
-    [-0.085216,0.12609,0.049001],
-    [-0.089538,0.12621,0.044589],
-    [-0.082659,0.11661,0.04797],
-    [-0.089536,0.11784,0.04457],
-    [-0.0565,0.15248,0.030132],
-    [-0.055517,0.15313,0.026915],
-    [-0.03625,0.17198,0.00017688],
-    [-0.03775,0.17198,0.00022189],
-    [-0.03625,0.16935,0.00051958],
-    [-0.033176,0.15711,0.0018682],
-    [-0.051913,0.1545,0.011273],
-    [-0.041707,0.16642,0.0030522],
-    [-0.049468,0.16414,0.0041988],
-    [-0.041892,0.15669,0.0054879],
-    [-0.051224,0.15878,0.0080283],
-    [-0.062417,0.15317,0.033161],
-    [-0.07167,0.15319,0.033701],
-    [-0.062543,0.15524,0.027405],
-    [-0.07211,0.1555,0.027645],
-    [-0.078663,0.15269,0.032268],
-    [-0.081569,0.15374,0.026085],
-    [-0.08725,0.1523,0.022135],
-    [-0.05725,0.15568,0.010325],
-    [-0.057888,0.1575,0.0073225],
-    [-0.0885,0.15223,0.019215],
-    [-0.056129,0.14616,0.03085],
-    [-0.054705,0.13555,0.032127],
-    [-0.054144,0.14714,0.026275],
-    [-0.046625,0.13234,0.021909],
-    [-0.05139,0.13694,0.025787],
-    [-0.018278,0.12238,0.030773],
-    [-0.021656,0.11643,0.035209],
-    [-0.031921,0.11566,0.032851],
-    [-0.021348,0.12421,0.024562],
-    [-0.03241,0.12349,0.023293],
-    [-0.024869,0.12094,0.028745],
-    [-0.031747,0.12039,0.028229],
-    [-0.052912,0.12686,0.034968],
-    [-0.041672,0.11564,0.032998],
-    [-0.052037,0.1168,0.034582],
-    [-0.042495,0.12488,0.024082],
-    [-0.047946,0.12736,0.028108],
-    [-0.042421,0.12035,0.028633],
-    [-0.047661,0.12024,0.028871],
-    [-0.035964,0.1513,0.0005395],
-    [-0.050598,0.1474,0.013881],
-    [-0.046375,0.13293,0.018289],
-    [-0.049125,0.13856,0.016269],
-    [-0.042976,0.14915,0.0054003],
-    [-0.047965,0.14659,0.0086783],
-    [-0.022926,0.1263,0.018077],
-    [-0.031583,0.1259,0.017804],
-    [-0.041733,0.12796,0.01665],
-    [-0.061482,0.14698,0.036168],
-    [-0.071729,0.15026,0.038328],
-    [-0.060526,0.1368,0.035999],
-    [-0.082619,0.14823,0.035955],
-    [-0.087824,0.14449,0.033779],
-    [-0.089,0.13828,0.037774],
-    [-0.085662,0.15095,0.028208],
-    [-0.089601,0.14725,0.025869],
-    [-0.090681,0.13748,0.02369],
-    [-0.058722,0.12924,0.038992],
-    [-0.060075,0.11512,0.037685],
-    [-0.091812,0.12767,0.038703],
-    [-0.091727,0.11657,0.039619],
-    [-0.093164,0.12721,0.025211],
-    [-0.093938,0.12067,0.024399],
-    [-0.091583,0.14522,0.01986],
-    [-0.090929,0.13667,0.019817],
-    [-0.093094,0.11635,0.018959],
-    [0.024948,0.10286,0.041418],
-    [0.0336,0.092627,0.040463],
-    [0.02742,0.096386,0.043312],
-    [0.03392,0.086911,0.041034],
-    [0.028156,0.086837,0.045084],
-    [0.03381,0.078604,0.040854],
-    [0.028125,0.076874,0.045059],
-    [0.0145,0.093279,0.05088],
-    [0.0074817,0.09473,0.052315],
-    [0.017407,0.10535,0.043139],
-    [0.0079536,0.10633,0.042968],
-    [0.018511,0.097194,0.047253],
-    [0.0086436,0.099323,0.048079],
-    [-0.0020197,0.095698,0.053906],
-    [-0.011446,0.095169,0.053862],
-    [-0.001875,0.10691,0.043455],
-    [-0.011875,0.10688,0.043019],
-    [-0.0017622,0.10071,0.046648],
-    [-0.012498,0.10008,0.045916],
-    [0.016381,0.085894,0.051642],
-    [0.0081167,0.08691,0.055228],
-    [0.017644,0.076955,0.052372],
-    [0.008125,0.076853,0.055536],
-    [0.020575,0.088169,0.049006],
-    [0.022445,0.075721,0.049563],
-    [-0.0017931,0.086849,0.056843],
-    [-0.011943,0.086771,0.057009],
-    [-0.0019567,0.076863,0.057803],
-    [-0.011875,0.076964,0.057022],
-    [0.03325,0.067541,0.040033],
-    [0.028149,0.066829,0.042953],
-    [0.026761,0.057829,0.042588],
-    [0.023571,0.04746,0.040428],
-    [0.015832,0.067418,0.051639],
-    [0.0080431,0.066902,0.055006],
-    [0.013984,0.058886,0.050416],
-    [0.0080973,0.056888,0.05295],
-    [0.020566,0.065958,0.0483],
-    [0.018594,0.056539,0.047879],
-    [0.012875,0.052652,0.049689],
-    [-0.0017852,0.066712,0.056503],
-    [-0.011785,0.066885,0.055015],
-    [-0.001875,0.056597,0.05441],
-    [-0.01184,0.057054,0.052714],
-    [-0.015688,0.052469,0.049615],
-    [0.0066154,0.04993,0.051259],
-    [0.018088,0.046655,0.043321],
-    [0.008841,0.045437,0.046623],
-    [0.017688,0.039719,0.043084],
-    [0.008125,0.039516,0.045374],
-    [-0.0016111,0.049844,0.05172],
-    [-0.01245,0.046773,0.050903],
-    [-0.013851,0.039778,0.051036],
-    [-0.0020294,0.044874,0.047587],
-    [-0.011653,0.04686,0.048661],
-    [-0.0018611,0.039606,0.047339],
-    [-0.0091545,0.03958,0.049415],
-    [0.043661,0.094028,0.02252],
-    [0.034642,0.10473,0.031831],
-    [0.028343,0.1072,0.036339],
-    [0.036339,0.096552,0.034843],
-    [0.031733,0.099372,0.038505],
-    [0.036998,0.10668,0.026781],
-    [0.032875,0.11108,0.02959],
-    [0.040938,0.097132,0.026663],
-    [0.044153,0.086466,0.024241],
-    [0.05375,0.072221,0.020429],
-    [0.04516,0.076574,0.023594],
-    [0.038036,0.086663,0.035459],
-    [0.037861,0.076625,0.035658],
-    [0.042216,0.087237,0.028254],
-    [0.042355,0.076747,0.02858],
-    [0.043875,0.096228,0.015269],
-    [0.044375,0.096797,0.0086445],
-    [0.039545,0.1061,0.017655],
-    [0.042313,0.10009,0.017237],
-    [0.045406,0.087417,0.015604],
-    [0.055118,0.072639,0.017944],
-    [0.048722,0.07376,0.017434],
-    [0.045917,0.086298,0.0094211],
-    [0.019433,0.1096,0.039063],
-    [0.01097,0.11058,0.039648],
-    [0.046657,0.057153,0.031337],
-    [0.056079,0.066335,0.024122],
-    [0.048168,0.06701,0.026298],
-    [0.056055,0.057253,0.024902],
-    [0.051163,0.056662,0.029137],
-    [0.036914,0.067032,0.036122],
-    [0.033,0.06472,0.039903],
-    [0.038004,0.056507,0.033119],
-    [0.030629,0.054915,0.038484],
-    [0.041875,0.066383,0.028357],
-    [0.041434,0.06088,0.029632],
-    [0.044921,0.049904,0.031243],
-    [0.054635,0.050167,0.022044],
-    [0.04828,0.04737,0.025845],
-    [0.037973,0.048347,0.031456],
-    [0.028053,0.047061,0.035991],
-    [0.025595,0.040346,0.03415],
-    [0.038455,0.043509,0.028278],
-    [0.032031,0.043278,0.029253],
-    [0.036581,0.040335,0.025144],
-    [0.03019,0.039321,0.026847],
-    [0.059333,0.067891,0.017361],
-    [0.0465,0.071452,0.01971],
-    [0.059562,0.057747,0.01834],
-    [0.055636,0.049199,0.019173],
-    [0.0505,0.045064,0.019181],
-    [0.023,0.047803,0.039776],
-    [0.022389,0.03886,0.038795],
-    [-0.019545,0.0939,0.052205],
-    [-0.021462,0.10618,0.042059],
-    [-0.031027,0.10395,0.041228],
-    [-0.022521,0.097723,0.045194],
-    [-0.031858,0.097026,0.043878],
-    [-0.043262,0.10412,0.040891],
-    [-0.052154,0.10404,0.040972],
-    [-0.041875,0.096944,0.042424],
-    [-0.051919,0.096967,0.043563],
-    [-0.021489,0.086672,0.054767],
-    [-0.027,0.083087,0.050284],
-    [-0.02107,0.077249,0.054365],
-    [-0.026011,0.089634,0.048981],
-    [-0.031893,0.087035,0.044169],
-    [-0.025625,0.074892,0.047102],
-    [-0.03197,0.0769,0.042177],
-    [-0.041824,0.086954,0.043295],
-    [-0.051825,0.086844,0.044933],
-    [-0.041918,0.076728,0.042564],
-    [-0.051849,0.076877,0.042992],
-    [-0.061339,0.10393,0.041164],
-    [-0.072672,0.10976,0.044294],
-    [-0.061784,0.096825,0.043327],
-    [-0.070058,0.096203,0.041397],
-    [-0.080439,0.11091,0.044343],
-    [-0.061927,0.086724,0.04452],
-    [-0.070344,0.087352,0.041908],
-    [-0.06141,0.077489,0.042178],
-    [-0.068579,0.080144,0.041024],
-    [-0.019045,0.067732,0.052388],
-    [-0.017742,0.058909,0.050809],
-    [-0.023548,0.066382,0.045226],
-    [-0.03399,0.067795,0.040929],
-    [-0.02169,0.056549,0.045164],
-    [-0.036111,0.060706,0.040407],
-    [-0.041231,0.066951,0.041392],
-    [-0.048588,0.070956,0.040357],
-    [-0.0403,0.059465,0.040446],
-    [-0.02192,0.044965,0.052258],
-    [-0.029187,0.043585,0.051088],
-    [-0.021919,0.039826,0.053521],
-    [-0.030331,0.039749,0.052133],
-    [-0.021998,0.049847,0.046725],
-    [-0.031911,0.046848,0.045187],
-    [-0.035276,0.039753,0.047529],
-    [-0.042016,0.044823,0.041594],
-    [-0.05194,0.044707,0.043498],
-    [-0.041928,0.039327,0.043582],
-    [-0.051857,0.039252,0.046212],
-    [-0.059453,0.04424,0.042862],
-    [-0.060765,0.039087,0.044363],
-    [-0.024273,0.11038,0.039129],
-    [-0.032379,0.10878,0.037952],
-    [-0.041152,0.10853,0.037969],
-    [-0.051698,0.10906,0.038258],
-    [-0.062091,0.10877,0.038274],
-    [-0.071655,0.10596,0.037516],
-    [-0.074634,0.097746,0.038347],
-    [-0.07912,0.10508,0.032308],
-    [-0.080203,0.096758,0.033592],
-    [-0.08378,0.10568,0.025985],
-    [-0.087292,0.10314,0.020825],
-    [-0.08521,0.097079,0.02781],
-    [-0.088082,0.096456,0.022985],
-    [-0.07516,0.08604,0.038816],
-    [-0.064577,0.073455,0.03897],
-    [-0.072279,0.076416,0.036413],
-    [-0.076375,0.072563,0.02873],
-    [-0.080031,0.087076,0.03429],
-    [-0.078919,0.079371,0.032477],
-    [-0.084834,0.086686,0.026974],
-    [-0.087891,0.089233,0.022611],
-    [-0.081048,0.077169,0.025829],
-    [-0.086393,0.10784,0.018635],
-    [-0.087672,0.10492,0.017264],
-    [-0.089333,0.098483,0.01761],
-    [-0.086375,0.083067,0.018607],
-    [-0.089179,0.089186,0.018947],
-    [-0.082879,0.076109,0.017794],
-    [-0.0825,0.074674,0.0071175],
-    [-0.026437,0.064141,0.039321],
-    [-0.030035,0.06613,0.038942],
-    [-0.026131,0.056531,0.038882],
-    [-0.031664,0.056657,0.037742],
-    [-0.045716,0.064541,0.039166],
-    [-0.051959,0.066869,0.036733],
-    [-0.042557,0.055545,0.039026],
-    [-0.049406,0.056892,0.034344],
-    [-0.0555,0.062391,0.029498],
-    [-0.05375,0.058574,0.026313],
-    [-0.03406,0.050137,0.038577],
-    [-0.041741,0.04959,0.03929],
-    [-0.050975,0.049435,0.036965],
-    [-0.053,0.051065,0.029209],
-    [-0.054145,0.054568,0.012257],
-    [-0.055848,0.05417,0.0083272],
-    [-0.054844,0.049295,0.011462],
-    [-0.05615,0.050619,0.0092929],
-    [-0.061451,0.068257,0.035376],
-    [-0.069725,0.069958,0.032788],
-    [-0.062823,0.063322,0.026886],
-    [-0.071037,0.066787,0.025228],
-    [-0.060857,0.060568,0.022643],
-    [-0.067,0.061558,0.020109],
-    [-0.0782,0.071279,0.021032],
-    [-0.062116,0.045145,0.037802],
-    [-0.065473,0.039513,0.037964],
-    [-0.06725,0.03742,0.033413],
-    [-0.072702,0.065008,0.018701],
-    [-0.06145,0.059165,0.018731],
-    [-0.0675,0.061479,0.019221],
-    [-0.057411,0.054114,0.0038257],
-    [-0.079222,0.070654,0.017735],
-    [-0.062473,0.04468,0.01111],
-    [-0.06725,0.042258,0.010414],
-    [-0.066389,0.040515,0.01316],
-    [-0.068359,0.038502,0.011958],
-    [-0.061381,0.04748,0.007607],
-    [-0.068559,0.043549,0.0081576],
-    [-0.070929,0.03983,0.0085888],
-    [-0.016625,0.18375,-0.019735],
-    [-0.015198,0.17471,-0.018868],
-    [-0.015944,0.16264,-0.0091037],
-    [-0.015977,0.1607,-0.0088072],
-    [-0.013251,0.16708,-0.015264],
-    [-0.014292,0.16098,-0.011252],
-    [-0.013986,0.184,-0.023739],
-    [-0.011633,0.17699,-0.023349],
-    [-0.0091029,0.16988,-0.021457],
-    [-0.025562,0.18273,-0.0096247],
-    [-0.02725,0.18254,-0.0094384],
-    [-0.025736,0.17948,-0.0089653],
-    [-0.031216,0.17589,-0.0051154],
-    [-0.020399,0.1845,-0.014943],
-    [-0.021339,0.17645,-0.014566],
-    [-0.027125,0.17234,-0.010156],
-    [-0.03939,0.1733,-0.0023575],
-    [-0.022876,0.16406,-0.0078103],
-    [-0.031597,0.16651,-0.0049292],
-    [-0.0226,0.15912,-0.003799],
-    [-0.030372,0.15767,-0.0012672],
-    [-0.021158,0.16849,-0.012383],
-    [-0.027,0.1712,-0.01022],
-    [-0.041719,0.16813,-0.00074958],
-    [-0.04825,0.16748,-0.00015191],
-    [-0.03725,0.16147,-7.2628e-05],
-    [-0.066429,0.15783,-0.0085673],
-    [-0.071284,0.15839,-0.005998],
-    [-0.065979,0.16288,-0.017792],
-    [-0.071623,0.16384,-0.01576],
-    [-0.066068,0.16051,-0.013567],
-    [-0.073307,0.16049,-0.011832],
-    [-0.077,0.16204,-0.019241],
-    [-0.077179,0.15851,-0.01495],
-    [-0.073691,0.17286,-0.037944],
-    [-0.07755,0.17221,-0.039175],
-    [-0.065921,0.16586,-0.025022],
-    [-0.072095,0.16784,-0.024725],
-    [-0.066,0.16808,-0.030916],
-    [-0.073448,0.17051,-0.032045],
-    [-0.07777,0.16434,-0.025938],
-    [-0.077893,0.16039,-0.021299],
-    [-0.078211,0.169,-0.034566],
-    [-0.034667,0.15131,-0.00071029],
-    [-0.066117,0.17353,-0.047453],
-    [-0.071986,0.17612,-0.045384],
-    [-0.06925,0.182,-0.055026],
-    [-0.064992,0.17802,-0.054645],
-    [-0.069935,0.17983,-0.051988],
-    [-0.07793,0.17516,-0.0444]
-])
+from __future__ import annotations
+import numpy as np
+import pymeshlab as ml
+
+BUNNY = np.array(
+    [
+        [0.0054216, 0.11349, 0.040749],
+        [-0.0017447, 0.11425, 0.041273],
+        [-0.010661, 0.11338, 0.040916],
+        [0.026422, 0.11499, 0.032623],
+        [0.024545, 0.12284, 0.024255],
+        [0.034137, 0.11316, 0.02507],
+        [0.02886, 0.11773, 0.027037],
+        [0.02675, 0.12234, 0.017605],
+        [0.03575, 0.1123, 0.019109],
+        [0.015982, 0.12307, 0.031279],
+        [0.0079813, 0.12438, 0.032798],
+        [0.018101, 0.11674, 0.035493],
+        [0.0086687, 0.11758, 0.037538],
+        [0.01808, 0.12536, 0.026132],
+        [0.0080861, 0.12866, 0.02619],
+        [0.02275, 0.12146, 0.029671],
+        [-0.0018689, 0.12456, 0.033184],
+        [-0.011168, 0.12376, 0.032519],
+        [-0.0020063, 0.11937, 0.038104],
+        [-0.01232, 0.11816, 0.037427],
+        [-0.0016659, 0.12879, 0.026782],
+        [-0.011971, 0.12723, 0.026219],
+        [0.016484, 0.12828, 0.01928],
+        [0.0070921, 0.13103, 0.018415],
+        [0.0014615, 0.13134, 0.017095],
+        [-0.013821, 0.12886, 0.019265],
+        [-0.01725, 0.11202, 0.040077],
+        [-0.074556, 0.13415, 0.051046],
+        [-0.065971, 0.14396, 0.04109],
+        [-0.071925, 0.14545, 0.043266],
+        [-0.06551, 0.13624, 0.042195],
+        [-0.071112, 0.13767, 0.047518],
+        [-0.079528, 0.13416, 0.051194],
+        [-0.080421, 0.14428, 0.042793],
+        [-0.082672, 0.1378, 0.046806],
+        [-0.08813, 0.13514, 0.042222],
+        [-0.066325, 0.12347, 0.050729],
+        [-0.072399, 0.12662, 0.052364],
+        [-0.066091, 0.11973, 0.050881],
+        [-0.072012, 0.11811, 0.052295],
+        [-0.062433, 0.12627, 0.043831],
+        [-0.068326, 0.12998, 0.048875],
+        [-0.063094, 0.11811, 0.044399],
+        [-0.071301, 0.11322, 0.04841],
+        [-0.080515, 0.12741, 0.052034],
+        [-0.078179, 0.1191, 0.051116],
+        [-0.085216, 0.12609, 0.049001],
+        [-0.089538, 0.12621, 0.044589],
+        [-0.082659, 0.11661, 0.04797],
+        [-0.089536, 0.11784, 0.04457],
+        [-0.0565, 0.15248, 0.030132],
+        [-0.055517, 0.15313, 0.026915],
+        [-0.03625, 0.17198, 0.00017688],
+        [-0.03775, 0.17198, 0.00022189],
+        [-0.03625, 0.16935, 0.00051958],
+        [-0.033176, 0.15711, 0.0018682],
+        [-0.051913, 0.1545, 0.011273],
+        [-0.041707, 0.16642, 0.0030522],
+        [-0.049468, 0.16414, 0.0041988],
+        [-0.041892, 0.15669, 0.0054879],
+        [-0.051224, 0.15878, 0.0080283],
+        [-0.062417, 0.15317, 0.033161],
+        [-0.07167, 0.15319, 0.033701],
+        [-0.062543, 0.15524, 0.027405],
+        [-0.07211, 0.1555, 0.027645],
+        [-0.078663, 0.15269, 0.032268],
+        [-0.081569, 0.15374, 0.026085],
+        [-0.08725, 0.1523, 0.022135],
+        [-0.05725, 0.15568, 0.010325],
+        [-0.057888, 0.1575, 0.0073225],
+        [-0.0885, 0.15223, 0.019215],
+        [-0.056129, 0.14616, 0.03085],
+        [-0.054705, 0.13555, 0.032127],
+        [-0.054144, 0.14714, 0.026275],
+        [-0.046625, 0.13234, 0.021909],
+        [-0.05139, 0.13694, 0.025787],
+        [-0.018278, 0.12238, 0.030773],
+        [-0.021656, 0.11643, 0.035209],
+        [-0.031921, 0.11566, 0.032851],
+        [-0.021348, 0.12421, 0.024562],
+        [-0.03241, 0.12349, 0.023293],
+        [-0.024869, 0.12094, 0.028745],
+        [-0.031747, 0.12039, 0.028229],
+        [-0.052912, 0.12686, 0.034968],
+        [-0.041672, 0.11564, 0.032998],
+        [-0.052037, 0.1168, 0.034582],
+        [-0.042495, 0.12488, 0.024082],
+        [-0.047946, 0.12736, 0.028108],
+        [-0.042421, 0.12035, 0.028633],
+        [-0.047661, 0.12024, 0.028871],
+        [-0.035964, 0.1513, 0.0005395],
+        [-0.050598, 0.1474, 0.013881],
+        [-0.046375, 0.13293, 0.018289],
+        [-0.049125, 0.13856, 0.016269],
+        [-0.042976, 0.14915, 0.0054003],
+        [-0.047965, 0.14659, 0.0086783],
+        [-0.022926, 0.1263, 0.018077],
+        [-0.031583, 0.1259, 0.017804],
+        [-0.041733, 0.12796, 0.01665],
+        [-0.061482, 0.14698, 0.036168],
+        [-0.071729, 0.15026, 0.038328],
+        [-0.060526, 0.1368, 0.035999],
+        [-0.082619, 0.14823, 0.035955],
+        [-0.087824, 0.14449, 0.033779],
+        [-0.089, 0.13828, 0.037774],
+        [-0.085662, 0.15095, 0.028208],
+        [-0.089601, 0.14725, 0.025869],
+        [-0.090681, 0.13748, 0.02369],
+        [-0.058722, 0.12924, 0.038992],
+        [-0.060075, 0.11512, 0.037685],
+        [-0.091812, 0.12767, 0.038703],
+        [-0.091727, 0.11657, 0.039619],
+        [-0.093164, 0.12721, 0.025211],
+        [-0.093938, 0.12067, 0.024399],
+        [-0.091583, 0.14522, 0.01986],
+        [-0.090929, 0.13667, 0.019817],
+        [-0.093094, 0.11635, 0.018959],
+        [0.024948, 0.10286, 0.041418],
+        [0.0336, 0.092627, 0.040463],
+        [0.02742, 0.096386, 0.043312],
+        [0.03392, 0.086911, 0.041034],
+        [0.028156, 0.086837, 0.045084],
+        [0.03381, 0.078604, 0.040854],
+        [0.028125, 0.076874, 0.045059],
+        [0.0145, 0.093279, 0.05088],
+        [0.0074817, 0.09473, 0.052315],
+        [0.017407, 0.10535, 0.043139],
+        [0.0079536, 0.10633, 0.042968],
+        [0.018511, 0.097194, 0.047253],
+        [0.0086436, 0.099323, 0.048079],
+        [-0.0020197, 0.095698, 0.053906],
+        [-0.011446, 0.095169, 0.053862],
+        [-0.001875, 0.10691, 0.043455],
+        [-0.011875, 0.10688, 0.043019],
+        [-0.0017622, 0.10071, 0.046648],
+        [-0.012498, 0.10008, 0.045916],
+        [0.016381, 0.085894, 0.051642],
+        [0.0081167, 0.08691, 0.055228],
+        [0.017644, 0.076955, 0.052372],
+        [0.008125, 0.076853, 0.055536],
+        [0.020575, 0.088169, 0.049006],
+        [0.022445, 0.075721, 0.049563],
+        [-0.0017931, 0.086849, 0.056843],
+        [-0.011943, 0.086771, 0.057009],
+        [-0.0019567, 0.076863, 0.057803],
+        [-0.011875, 0.076964, 0.057022],
+        [0.03325, 0.067541, 0.040033],
+        [0.028149, 0.066829, 0.042953],
+        [0.026761, 0.057829, 0.042588],
+        [0.023571, 0.04746, 0.040428],
+        [0.015832, 0.067418, 0.051639],
+        [0.0080431, 0.066902, 0.055006],
+        [0.013984, 0.058886, 0.050416],
+        [0.0080973, 0.056888, 0.05295],
+        [0.020566, 0.065958, 0.0483],
+        [0.018594, 0.056539, 0.047879],
+        [0.012875, 0.052652, 0.049689],
+        [-0.0017852, 0.066712, 0.056503],
+        [-0.011785, 0.066885, 0.055015],
+        [-0.001875, 0.056597, 0.05441],
+        [-0.01184, 0.057054, 0.052714],
+        [-0.015688, 0.052469, 0.049615],
+        [0.0066154, 0.04993, 0.051259],
+        [0.018088, 0.046655, 0.043321],
+        [0.008841, 0.045437, 0.046623],
+        [0.017688, 0.039719, 0.043084],
+        [0.008125, 0.039516, 0.045374],
+        [-0.0016111, 0.049844, 0.05172],
+        [-0.01245, 0.046773, 0.050903],
+        [-0.013851, 0.039778, 0.051036],
+        [-0.0020294, 0.044874, 0.047587],
+        [-0.011653, 0.04686, 0.048661],
+        [-0.0018611, 0.039606, 0.047339],
+        [-0.0091545, 0.03958, 0.049415],
+        [0.043661, 0.094028, 0.02252],
+        [0.034642, 0.10473, 0.031831],
+        [0.028343, 0.1072, 0.036339],
+        [0.036339, 0.096552, 0.034843],
+        [0.031733, 0.099372, 0.038505],
+        [0.036998, 0.10668, 0.026781],
+        [0.032875, 0.11108, 0.02959],
+        [0.040938, 0.097132, 0.026663],
+        [0.044153, 0.086466, 0.024241],
+        [0.05375, 0.072221, 0.020429],
+        [0.04516, 0.076574, 0.023594],
+        [0.038036, 0.086663, 0.035459],
+        [0.037861, 0.076625, 0.035658],
+        [0.042216, 0.087237, 0.028254],
+        [0.042355, 0.076747, 0.02858],
+        [0.043875, 0.096228, 0.015269],
+        [0.044375, 0.096797, 0.0086445],
+        [0.039545, 0.1061, 0.017655],
+        [0.042313, 0.10009, 0.017237],
+        [0.045406, 0.087417, 0.015604],
+        [0.055118, 0.072639, 0.017944],
+        [0.048722, 0.07376, 0.017434],
+        [0.045917, 0.086298, 0.0094211],
+        [0.019433, 0.1096, 0.039063],
+        [0.01097, 0.11058, 0.039648],
+        [0.046657, 0.057153, 0.031337],
+        [0.056079, 0.066335, 0.024122],
+        [0.048168, 0.06701, 0.026298],
+        [0.056055, 0.057253, 0.024902],
+        [0.051163, 0.056662, 0.029137],
+        [0.036914, 0.067032, 0.036122],
+        [0.033, 0.06472, 0.039903],
+        [0.038004, 0.056507, 0.033119],
+        [0.030629, 0.054915, 0.038484],
+        [0.041875, 0.066383, 0.028357],
+        [0.041434, 0.06088, 0.029632],
+        [0.044921, 0.049904, 0.031243],
+        [0.054635, 0.050167, 0.022044],
+        [0.04828, 0.04737, 0.025845],
+        [0.037973, 0.048347, 0.031456],
+        [0.028053, 0.047061, 0.035991],
+        [0.025595, 0.040346, 0.03415],
+        [0.038455, 0.043509, 0.028278],
+        [0.032031, 0.043278, 0.029253],
+        [0.036581, 0.040335, 0.025144],
+        [0.03019, 0.039321, 0.026847],
+        [0.059333, 0.067891, 0.017361],
+        [0.0465, 0.071452, 0.01971],
+        [0.059562, 0.057747, 0.01834],
+        [0.055636, 0.049199, 0.019173],
+        [0.0505, 0.045064, 0.019181],
+        [0.023, 0.047803, 0.039776],
+        [0.022389, 0.03886, 0.038795],
+        [-0.019545, 0.0939, 0.052205],
+        [-0.021462, 0.10618, 0.042059],
+        [-0.031027, 0.10395, 0.041228],
+        [-0.022521, 0.097723, 0.045194],
+        [-0.031858, 0.097026, 0.043878],
+        [-0.043262, 0.10412, 0.040891],
+        [-0.052154, 0.10404, 0.040972],
+        [-0.041875, 0.096944, 0.042424],
+        [-0.051919, 0.096967, 0.043563],
+        [-0.021489, 0.086672, 0.054767],
+        [-0.027, 0.083087, 0.050284],
+        [-0.02107, 0.077249, 0.054365],
+        [-0.026011, 0.089634, 0.048981],
+        [-0.031893, 0.087035, 0.044169],
+        [-0.025625, 0.074892, 0.047102],
+        [-0.03197, 0.0769, 0.042177],
+        [-0.041824, 0.086954, 0.043295],
+        [-0.051825, 0.086844, 0.044933],
+        [-0.041918, 0.076728, 0.042564],
+        [-0.051849, 0.076877, 0.042992],
+        [-0.061339, 0.10393, 0.041164],
+        [-0.072672, 0.10976, 0.044294],
+        [-0.061784, 0.096825, 0.043327],
+        [-0.070058, 0.096203, 0.041397],
+        [-0.080439, 0.11091, 0.044343],
+        [-0.061927, 0.086724, 0.04452],
+        [-0.070344, 0.087352, 0.041908],
+        [-0.06141, 0.077489, 0.042178],
+        [-0.068579, 0.080144, 0.041024],
+        [-0.019045, 0.067732, 0.052388],
+        [-0.017742, 0.058909, 0.050809],
+        [-0.023548, 0.066382, 0.045226],
+        [-0.03399, 0.067795, 0.040929],
+        [-0.02169, 0.056549, 0.045164],
+        [-0.036111, 0.060706, 0.040407],
+        [-0.041231, 0.066951, 0.041392],
+        [-0.048588, 0.070956, 0.040357],
+        [-0.0403, 0.059465, 0.040446],
+        [-0.02192, 0.044965, 0.052258],
+        [-0.029187, 0.043585, 0.051088],
+        [-0.021919, 0.039826, 0.053521],
+        [-0.030331, 0.039749, 0.052133],
+        [-0.021998, 0.049847, 0.046725],
+        [-0.031911, 0.046848, 0.045187],
+        [-0.035276, 0.039753, 0.047529],
+        [-0.042016, 0.044823, 0.041594],
+        [-0.05194, 0.044707, 0.043498],
+        [-0.041928, 0.039327, 0.043582],
+        [-0.051857, 0.039252, 0.046212],
+        [-0.059453, 0.04424, 0.042862],
+        [-0.060765, 0.039087, 0.044363],
+        [-0.024273, 0.11038, 0.039129],
+        [-0.032379, 0.10878, 0.037952],
+        [-0.041152, 0.10853, 0.037969],
+        [-0.051698, 0.10906, 0.038258],
+        [-0.062091, 0.10877, 0.038274],
+        [-0.071655, 0.10596, 0.037516],
+        [-0.074634, 0.097746, 0.038347],
+        [-0.07912, 0.10508, 0.032308],
+        [-0.080203, 0.096758, 0.033592],
+        [-0.08378, 0.10568, 0.025985],
+        [-0.087292, 0.10314, 0.020825],
+        [-0.08521, 0.097079, 0.02781],
+        [-0.088082, 0.096456, 0.022985],
+        [-0.07516, 0.08604, 0.038816],
+        [-0.064577, 0.073455, 0.03897],
+        [-0.072279, 0.076416, 0.036413],
+        [-0.076375, 0.072563, 0.02873],
+        [-0.080031, 0.087076, 0.03429],
+        [-0.078919, 0.079371, 0.032477],
+        [-0.084834, 0.086686, 0.026974],
+        [-0.087891, 0.089233, 0.022611],
+        [-0.081048, 0.077169, 0.025829],
+        [-0.086393, 0.10784, 0.018635],
+        [-0.087672, 0.10492, 0.017264],
+        [-0.089333, 0.098483, 0.01761],
+        [-0.086375, 0.083067, 0.018607],
+        [-0.089179, 0.089186, 0.018947],
+        [-0.082879, 0.076109, 0.017794],
+        [-0.0825, 0.074674, 0.0071175],
+        [-0.026437, 0.064141, 0.039321],
+        [-0.030035, 0.06613, 0.038942],
+        [-0.026131, 0.056531, 0.038882],
+        [-0.031664, 0.056657, 0.037742],
+        [-0.045716, 0.064541, 0.039166],
+        [-0.051959, 0.066869, 0.036733],
+        [-0.042557, 0.055545, 0.039026],
+        [-0.049406, 0.056892, 0.034344],
+        [-0.0555, 0.062391, 0.029498],
+        [-0.05375, 0.058574, 0.026313],
+        [-0.03406, 0.050137, 0.038577],
+        [-0.041741, 0.04959, 0.03929],
+        [-0.050975, 0.049435, 0.036965],
+        [-0.053, 0.051065, 0.029209],
+        [-0.054145, 0.054568, 0.012257],
+        [-0.055848, 0.05417, 0.0083272],
+        [-0.054844, 0.049295, 0.011462],
+        [-0.05615, 0.050619, 0.0092929],
+        [-0.061451, 0.068257, 0.035376],
+        [-0.069725, 0.069958, 0.032788],
+        [-0.062823, 0.063322, 0.026886],
+        [-0.071037, 0.066787, 0.025228],
+        [-0.060857, 0.060568, 0.022643],
+        [-0.067, 0.061558, 0.020109],
+        [-0.0782, 0.071279, 0.021032],
+        [-0.062116, 0.045145, 0.037802],
+        [-0.065473, 0.039513, 0.037964],
+        [-0.06725, 0.03742, 0.033413],
+        [-0.072702, 0.065008, 0.018701],
+        [-0.06145, 0.059165, 0.018731],
+        [-0.0675, 0.061479, 0.019221],
+        [-0.057411, 0.054114, 0.0038257],
+        [-0.079222, 0.070654, 0.017735],
+        [-0.062473, 0.04468, 0.01111],
+        [-0.06725, 0.042258, 0.010414],
+        [-0.066389, 0.040515, 0.01316],
+        [-0.068359, 0.038502, 0.011958],
+        [-0.061381, 0.04748, 0.007607],
+        [-0.068559, 0.043549, 0.0081576],
+        [-0.070929, 0.03983, 0.0085888],
+        [-0.016625, 0.18375, -0.019735],
+        [-0.015198, 0.17471, -0.018868],
+        [-0.015944, 0.16264, -0.0091037],
+        [-0.015977, 0.1607, -0.0088072],
+        [-0.013251, 0.16708, -0.015264],
+        [-0.014292, 0.16098, -0.011252],
+        [-0.013986, 0.184, -0.023739],
+        [-0.011633, 0.17699, -0.023349],
+        [-0.0091029, 0.16988, -0.021457],
+        [-0.025562, 0.18273, -0.0096247],
+        [-0.02725, 0.18254, -0.0094384],
+        [-0.025736, 0.17948, -0.0089653],
+        [-0.031216, 0.17589, -0.0051154],
+        [-0.020399, 0.1845, -0.014943],
+        [-0.021339, 0.17645, -0.014566],
+        [-0.027125, 0.17234, -0.010156],
+        [-0.03939, 0.1733, -0.0023575],
+        [-0.022876, 0.16406, -0.0078103],
+        [-0.031597, 0.16651, -0.0049292],
+        [-0.0226, 0.15912, -0.003799],
+        [-0.030372, 0.15767, -0.0012672],
+        [-0.021158, 0.16849, -0.012383],
+        [-0.027, 0.1712, -0.01022],
+        [-0.041719, 0.16813, -0.00074958],
+        [-0.04825, 0.16748, -0.00015191],
+        [-0.03725, 0.16147, -7.2628e-05],
+        [-0.066429, 0.15783, -0.0085673],
+        [-0.071284, 0.15839, -0.005998],
+        [-0.065979, 0.16288, -0.017792],
+        [-0.071623, 0.16384, -0.01576],
+        [-0.066068, 0.16051, -0.013567],
+        [-0.073307, 0.16049, -0.011832],
+        [-0.077, 0.16204, -0.019241],
+        [-0.077179, 0.15851, -0.01495],
+        [-0.073691, 0.17286, -0.037944],
+        [-0.07755, 0.17221, -0.039175],
+        [-0.065921, 0.16586, -0.025022],
+        [-0.072095, 0.16784, -0.024725],
+        [-0.066, 0.16808, -0.030916],
+        [-0.073448, 0.17051, -0.032045],
+        [-0.07777, 0.16434, -0.025938],
+        [-0.077893, 0.16039, -0.021299],
+        [-0.078211, 0.169, -0.034566],
+        [-0.034667, 0.15131, -0.00071029],
+        [-0.066117, 0.17353, -0.047453],
+        [-0.071986, 0.17612, -0.045384],
+        [-0.06925, 0.182, -0.055026],
+        [-0.064992, 0.17802, -0.054645],
+        [-0.069935, 0.17983, -0.051988],
+        [-0.07793, 0.17516, -0.0444],
+    ]
+)
+
 
 def make_sphere():
     """Generates a sphere by icosahedral subdivision"""
     ms = ml.MeshSet()
-    ms.sphere(radius=100, subdiv=3)
-    return [((ms.current_mesh().vertex_matrix(), 
-              ms.current_mesh().face_matrix(), 
-              ms.current_mesh().vertex_color_matrix().T), {"name": "Sphere"}, "surface")]
+    try:
+        ms.sphere(radius=100, subdiv=3)
+    except AttributeError:
+        ms.create_sphere(radius=100, subdiv=3)
+    return [
+        (
+            (
+                ms.current_mesh().vertex_matrix(),
+                ms.current_mesh().face_matrix(),
+                ms.current_mesh().vertex_color_matrix().T,
+            ),
+            {"name": "Sphere"},
+            "surface",
+        )
+    ]
+
 
 def make_shell():
     """Generate random points on a shell"""
     x, y, z = np.random.randn(3, 1000)
-    n = np.sqrt(x*x+y*y+z*z)
-    pts = 100*np.vstack([x,y,z]).T/n[:,None]
+    n = np.sqrt(x * x + y * y + z * z)
+    pts = 100 * np.vstack([x, y, z]).T / n[:, None]
     return [(pts, {"name": "Shell"}, "points")]
 
+
 def make_bunny():
-    return [(1000*BUNNY, {"name": "Bunny"}, "points")]
+    return [(1000 * BUNNY, {"name": "Bunny"}, "points")]

From 860940625905a6e4d5be48b5a44b1f1eeb9ecb8f Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Wed, 31 Jul 2024 23:41:19 +0200
Subject: [PATCH 15/23] Attempt to address segfault

---
 .github/workflows/test_and_deploy.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/test_and_deploy.yml b/.github/workflows/test_and_deploy.yml
index 19faf5b..4031db5 100644
--- a/.github/workflows/test_and_deploy.yml
+++ b/.github/workflows/test_and_deploy.yml
@@ -35,7 +35,7 @@ jobs:
         run: |
           python -m pip install --upgrade pip
           pip install -e .
-          pip install setuptools pytest pytest-cov
+          pip install setuptools pytest pytest-cov pytest-xvfb
 
       # this runs the platform-specific tests declared in tox.ini
       - name: Test with pytest

From 61325107cdf37d2f9d465e8ef70f3c8a92902ddd Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Wed, 31 Jul 2024 23:48:10 +0200
Subject: [PATCH 16/23] Restrict to 3.9

---
 .github/workflows/test_and_deploy.yml | 6 +-----
 setup.cfg                             | 3 ++-
 2 files changed, 3 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/test_and_deploy.yml b/.github/workflows/test_and_deploy.yml
index 4031db5..6ba80c3 100644
--- a/.github/workflows/test_and_deploy.yml
+++ b/.github/workflows/test_and_deploy.yml
@@ -4,15 +4,11 @@ name: tests
 
 on:
   push:
-    branches:
-      - main
-      - main
     tags:
       - "v*" # Push events to matching v*, i.e. v1.0, v20.15.10
   pull_request:
     branches:
       - main
-      - main
   workflow_dispatch:
 
 jobs:
@@ -22,7 +18,7 @@ jobs:
     strategy:
       matrix:
         platform: [ubuntu-latest, windows-latest] #, macos-latest]
-        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.9"]
 
     steps:
       - uses: actions/checkout@v4
diff --git a/setup.cfg b/setup.cfg
index c1fda0e..06741e9 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -22,9 +22,10 @@ classifiers =
     Topic :: Software Development :: Testing
     Programming Language :: Python
     Programming Language :: Python :: 3
-    Programming Language :: Python :: 3.7
     Programming Language :: Python :: 3.8
     Programming Language :: Python :: 3.9
+    Programming Language :: Python :: 3.10
+    Programming Language :: Python :: 3.11
     Operating System :: OS Independent
     License :: OSI Approved :: GNU General Public License v3 (GPLv3)
 

From 88fabfa008c07ebeedb34f0d752b4bd15f6cf1b1 Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Wed, 31 Jul 2024 23:50:37 +0200
Subject: [PATCH 17/23] Switch to pymeshlab supported ubuntu

---
 .github/workflows/test_and_deploy.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/test_and_deploy.yml b/.github/workflows/test_and_deploy.yml
index 6ba80c3..8c0f057 100644
--- a/.github/workflows/test_and_deploy.yml
+++ b/.github/workflows/test_and_deploy.yml
@@ -17,8 +17,8 @@ jobs:
     runs-on: ${{ matrix.platform }}
     strategy:
       matrix:
-        platform: [ubuntu-latest, windows-latest] #, macos-latest]
-        python-version: ["3.9"]
+        platform: ['ubuntu-20.04', 'windows-latest'] #, macos-latest]
+        python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
 
     steps:
       - uses: actions/checkout@v4

From 49d6a9b71b1dbd96b2dbd5e1c6b19a22267f9333 Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Wed, 31 Jul 2024 23:56:56 +0200
Subject: [PATCH 18/23] Skip convex_hull

---
 .github/workflows/test_and_deploy.yml         | 20 +++++++++++++++++--
 src/napari_pymeshlab/_tests/test_functions.py | 10 ++++++++--
 2 files changed, 26 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/test_and_deploy.yml b/.github/workflows/test_and_deploy.yml
index 8c0f057..d133231 100644
--- a/.github/workflows/test_and_deploy.yml
+++ b/.github/workflows/test_and_deploy.yml
@@ -16,9 +16,15 @@ jobs:
     name: ${{ matrix.platform }} py${{ matrix.python-version }}
     runs-on: ${{ matrix.platform }}
     strategy:
+      fail-fast: false
       matrix:
-        platform: ['ubuntu-20.04', 'windows-latest'] #, macos-latest]
+        platform: ['ubuntu-latest', 'windows-latest', 'macos-latest']
         python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
+        exclude:
+          - os: macos-latest
+            pyversion: '3.8'
+          - os: macos-latest
+            pyversion: '3.9'
 
     steps:
       - uses: actions/checkout@v4
@@ -48,12 +54,22 @@ jobs:
     needs: [test]
     runs-on: ubuntu-latest
     if: contains(github.ref, 'tags')
+    strategy:
+      fail-fast: false
+      matrix:
+        platform: ['ubuntu-latest', 'windows-latest', 'macos-latest']
+        python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
+        exclude:
+          - os: macos-latest
+            pyversion: '3.8'
+          - os: macos-latest
+            pyversion: '3.9'
     steps:
       - uses: actions/checkout@v4
       - name: Set up Python
         uses: actions/setup-python@v5
         with:
-          python-version: "3.x"
+          python-version: ${{ matrix.python-version }}
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
diff --git a/src/napari_pymeshlab/_tests/test_functions.py b/src/napari_pymeshlab/_tests/test_functions.py
index 5903db3..db1b4b0 100644
--- a/src/napari_pymeshlab/_tests/test_functions.py
+++ b/src/napari_pymeshlab/_tests/test_functions.py
@@ -1,5 +1,11 @@
 def test_something():
-    from napari_pymeshlab import convex_hull, laplacian_smooth, taubin_smooth, simplification_clustering_decimation, colorize_curvature_apss
+    from napari_pymeshlab import (
+        # convex_hull,
+        laplacian_smooth,
+        taubin_smooth,
+        simplification_clustering_decimation,
+        colorize_curvature_apss,
+    )
     from skimage.measure import regionprops
     from skimage.measure import marching_cubes
     from skimage.data import cells3d
@@ -21,7 +27,7 @@ def test_something():
     vertices, faces, normals, values = marching_cubes(binary, 0)
     surface = (vertices, faces, values)
 
-    convex_hull(surface)
+    # convex_hull(surface)
     laplacian_smooth(surface)
     taubin_smooth(surface)
     simplification_clustering_decimation(surface)

From 7a33fb1f43f91b3553e26c3e33edfa20a23013e3 Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Wed, 31 Jul 2024 23:57:58 +0200
Subject: [PATCH 19/23] Restore push checks

---
 .github/workflows/test_and_deploy.yml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/test_and_deploy.yml b/.github/workflows/test_and_deploy.yml
index d133231..69921c9 100644
--- a/.github/workflows/test_and_deploy.yml
+++ b/.github/workflows/test_and_deploy.yml
@@ -4,6 +4,8 @@ name: tests
 
 on:
   push:
+    branches:
+      - main
     tags:
       - "v*" # Push events to matching v*, i.e. v1.0, v20.15.10
   pull_request:

From bdc18dcb0b3d2bfb73cfc41f67a2e042c9864d8c Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Thu, 1 Aug 2024 00:00:48 +0200
Subject: [PATCH 20/23] Fix

---
 .github/workflows/test_and_deploy.yml | 16 ++++++++--------
 1 file changed, 8 insertions(+), 8 deletions(-)

diff --git a/.github/workflows/test_and_deploy.yml b/.github/workflows/test_and_deploy.yml
index 69921c9..a4879ed 100644
--- a/.github/workflows/test_and_deploy.yml
+++ b/.github/workflows/test_and_deploy.yml
@@ -23,10 +23,10 @@ jobs:
         platform: ['ubuntu-latest', 'windows-latest', 'macos-latest']
         python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
         exclude:
-          - os: macos-latest
-            pyversion: '3.8'
-          - os: macos-latest
-            pyversion: '3.9'
+          - platform: macos-latest
+            python-version: '3.8'
+          - platform: macos-latest
+            python-version: '3.9'
 
     steps:
       - uses: actions/checkout@v4
@@ -62,10 +62,10 @@ jobs:
         platform: ['ubuntu-latest', 'windows-latest', 'macos-latest']
         python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
         exclude:
-          - os: macos-latest
-            pyversion: '3.8'
-          - os: macos-latest
-            pyversion: '3.9'
+          - platform: macos-latest
+            python-version: '3.8'
+          - platform: macos-latest
+            python-version: '3.9'
     steps:
       - uses: actions/checkout@v4
       - name: Set up Python

From 04e8648f569a4ee1ec48930d2f8aee5565628fee Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Thu, 1 Aug 2024 00:01:58 +0200
Subject: [PATCH 21/23] Kill macos again

---
 .github/workflows/test_and_deploy.yml | 14 ++------------
 1 file changed, 2 insertions(+), 12 deletions(-)

diff --git a/.github/workflows/test_and_deploy.yml b/.github/workflows/test_and_deploy.yml
index a4879ed..1481ca4 100644
--- a/.github/workflows/test_and_deploy.yml
+++ b/.github/workflows/test_and_deploy.yml
@@ -20,13 +20,8 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        platform: ['ubuntu-latest', 'windows-latest', 'macos-latest']
+        platform: ['ubuntu-latest', 'windows-latest'] #, 'macos-latest']
         python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
-        exclude:
-          - platform: macos-latest
-            python-version: '3.8'
-          - platform: macos-latest
-            python-version: '3.9'
 
     steps:
       - uses: actions/checkout@v4
@@ -59,13 +54,8 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        platform: ['ubuntu-latest', 'windows-latest', 'macos-latest']
+        platform: ['ubuntu-latest', 'windows-latest'] #, 'macos-latest']
         python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
-        exclude:
-          - platform: macos-latest
-            python-version: '3.8'
-          - platform: macos-latest
-            python-version: '3.9'
     steps:
       - uses: actions/checkout@v4
       - name: Set up Python

From 00b70f50949aa1e2081304cac2de314250d40b50 Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Thu, 1 Aug 2024 00:06:35 +0200
Subject: [PATCH 22/23] Only stable on 3.8/3.9

---
 .github/workflows/test_and_deploy.yml         | 4 ++--
 src/napari_pymeshlab/_tests/test_functions.py | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/test_and_deploy.yml b/.github/workflows/test_and_deploy.yml
index 1481ca4..a46b0b9 100644
--- a/.github/workflows/test_and_deploy.yml
+++ b/.github/workflows/test_and_deploy.yml
@@ -21,7 +21,7 @@ jobs:
       fail-fast: false
       matrix:
         platform: ['ubuntu-latest', 'windows-latest'] #, 'macos-latest']
-        python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
+        python-version: ['3.8', '3.9']
 
     steps:
       - uses: actions/checkout@v4
@@ -55,7 +55,7 @@ jobs:
       fail-fast: false
       matrix:
         platform: ['ubuntu-latest', 'windows-latest'] #, 'macos-latest']
-        python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
+        python-version: ['3.8', '3.9']
     steps:
       - uses: actions/checkout@v4
       - name: Set up Python
diff --git a/src/napari_pymeshlab/_tests/test_functions.py b/src/napari_pymeshlab/_tests/test_functions.py
index db1b4b0..44f743b 100644
--- a/src/napari_pymeshlab/_tests/test_functions.py
+++ b/src/napari_pymeshlab/_tests/test_functions.py
@@ -1,6 +1,6 @@
 def test_something():
     from napari_pymeshlab import (
-        # convex_hull,
+        convex_hull,
         laplacian_smooth,
         taubin_smooth,
         simplification_clustering_decimation,
@@ -27,7 +27,7 @@ def test_something():
     vertices, faces, normals, values = marching_cubes(binary, 0)
     surface = (vertices, faces, values)
 
-    # convex_hull(surface)
+    convex_hull(surface)
     laplacian_smooth(surface)
     taubin_smooth(surface)
     simplification_clustering_decimation(surface)

From 932194d0d53521e74cfafe432a0eb00b9cf3d47c Mon Sep 17 00:00:00 2001
From: zacsimile <zachcm@gmail.com>
Date: Thu, 1 Aug 2024 00:11:14 +0200
Subject: [PATCH 23/23] Fix reqs

---
 .github/workflows/test_and_deploy.yml | 2 +-
 setup.cfg                             | 4 +---
 2 files changed, 2 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/test_and_deploy.yml b/.github/workflows/test_and_deploy.yml
index a46b0b9..c0cb467 100644
--- a/.github/workflows/test_and_deploy.yml
+++ b/.github/workflows/test_and_deploy.yml
@@ -49,7 +49,7 @@ jobs:
     # and requires that you have put your twine API key in your
     # github secrets (see readme for details)
     needs: [test]
-    runs-on: ubuntu-latest
+    runs-on: ${{ matrix.platform }}
     if: contains(github.ref, 'tags')
     strategy:
       fail-fast: false
diff --git a/setup.cfg b/setup.cfg
index 06741e9..84eb3cf 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -24,8 +24,6 @@ classifiers =
     Programming Language :: Python :: 3
     Programming Language :: Python :: 3.8
     Programming Language :: Python :: 3.9
-    Programming Language :: Python :: 3.10
-    Programming Language :: Python :: 3.11
     Operating System :: OS Independent
     License :: OSI Approved :: GNU General Public License v3 (GPLv3)
 
@@ -33,7 +31,7 @@ classifiers =
 [options]
 packages = find:
 include_package_data = True
-python_requires = >=3.7
+python_requires = >=3.8
 package_dir =
     =src