diff --git a/_cite/.cache/cache.db b/_cite/.cache/cache.db index 0459b15..30f5fc6 100644 Binary files a/_cite/.cache/cache.db and b/_cite/.cache/cache.db differ diff --git a/_data/citations.yaml b/_data/citations.yaml index 3857b29..43f2990 100644 --- a/_data/citations.yaml +++ b/_data/citations.yaml @@ -1,133 +1,5 @@ # DO NOT EDIT, GENERATED AUTOMATICALLY -- id: doi:10.1016/j.cell.2024.08.019 - title: Cross-disorder and disease-specific pathways in dementia revealed by single-cell genomics - authors: - - Rexach JE - - Cheng Y - - Chen L - - Polioudakis D - - Lin LC - - Mitri V - - Elkins A - - Han X - - Yamakawa M - - Yin A - - Calini D - - Kawaguchi R - - Ou J - - Huang J - - Williams C - - Robinson J - - Gaus SE - - Spina S - - Lee EB - - Grinberg LT - - Vinters H - - Trojanowski JQ - - Seeley WW - - Malhotra D - - Geschwind DH - publisher: Cell - date: '2024-09-09' - link: https://www.cell.com/cell/abstract/S0092-8674(24)00910-3 -- id: doi:10.1126/science.adh26 - title: Molecular cascades and cell-type specific signatures in autism spectrum disorders revealed by single cell genomics - authors: - - Wamsley B - - Bicks L - - Cheng Y - - Kawaguchi R - - Quintero D - - Grundman J, Liu J - - Xiao S - - Hawken N - - Margolis M - - Mazariegos S - - and Geschwind DH - publisher: Science - date: '2024-05-24' - link: https://www.science.org/doi/10.1126/science.adh2602 -- id: doi:10.1126/science.adi5199 - title: Single-cell genomics and regulatory networks for 388 human brains - authors: - - Emani PS - - Liu JJ - - Clarke D - - Jensen M - - Warrell J - - Gupta C - - Meng R - - Lee CY - - Xu S - - Dursun C - - Lou S - - (13 authors) - - Cheng Y - - et al. - publisher: Science - date: '2024-05-24' - link: https://www.science.org/doi/10.1126/science.adi5199 -- id: doi:10.1523/JNEUROSCI.2076-22.2023 - title: Integrin-driven Axon Regeneration in the Spinal Cord Activates a Distinctive CNS Regeneration Program - authors: - - Cheah M (co-first) - - Cheng Y (co-first) - - Petrova V - - Cimpean A - - Jendelova P - - Swarup V - - Woolf CJ - - Geschwind DH - - Fawcett JW - publisher: Journal of Neuroscience (cover) - date: '2023-06-28' - link: https://pubmed.ncbi.nlm.nih.gov/37277179/ -- id: doi:10.1016/j.neuron.2023.06.013 - title: The Intermittent Fasting Mimetic, 2-deoxyglucose, Reprograms Brain Derived Neurotrophic Factor (BDNF) transcription via an Adaptive ER Stress-ATF4 Pathway and Improves Outcomes in Alzheimer's and Stroke Models - authors: - - Kumar A - - Karuppagounder SS - - Chen Y - - Corona C - - Kawaguchi R - - Cheng Y - - Balkaya M - - Sagdullaev BT - - Wen Z - - Coppola G - - Stuart C - - Cho S - - Ming G - - Tuvikene J - - Timmusk T - - Geschwind DH - - Ratan RR - publisher: Neuron - date: '2023-07-11' - link: https://pubmed.ncbi.nlm.nih.gov/37453419/ -- id: doi:10.1038/s41467-022-31960-7 - title: Transcription factor network analysis identifies REST/NRSF as an intrinsic regulator of CNS regeneration - authors: - - Cheng Y - - Yin Y - - Zhang A - - Bernstein AM - - Kawaguchi R - - Gao K - - Potter K - - Gilbert H - - Ao Y - - Ou J - - Fricano-Kugler CJ - - Goldberg JL - - Woolf CJ - - Sofroniew MV - - Benowitz LI - - Geschwind DH - publisher: Nature Communications - date: '2022-07-29' - link: https://doi.org/10.1038/s41467-022-31960-7 - id: doi:10.1101/2022.01.20.477004 title: Core Transcription Programs Controlling Injury-Induced Neurodegeneration of Retinal Ganglion Cells @@ -220,20 +92,6 @@ orcid: 0000-0003-4647-4917 plugin: orcid.py file: orcid.yaml -- id: doi:10.1016/j.neures.2018.10.012 - title: Insulin growth factor 2 (IGF2) as an emergent target in psychiatric and neurological disorders - authors: - - Pardo M - - Cheng Y - - Sitbon YH - - Lowell JA - - Grieco SF - - Worthen RJ - - Desse S - - Barreda-Diaz A - publisher: Neuroscience Research - date: '2018-10-31' - link: https://doi.org/10.1016/j.neures.2018.10.012 - id: doi:10.1016/j.bbi.2018.02.003 title: "TNF\u03B1 disrupts blood brain barrier integrity to maintain prolonged depressive-like\ \ behavior in mice" @@ -317,22 +175,6 @@ orcid: 0000-0003-4647-4917 plugin: orcid.py file: orcid.yaml -- id: doi:10.1172/jci.insight.91782 - title: Intranasal siRNA administration can regulate learning and ameliorate deficits in Fragile X syndrome mice - authors: - - Pardo M - - Cheng Y - - Velmeshev D - - Magistri - - M - - Eldar-Finkelman H - - Martinez A - - Faghihi M - - Jope RS - - Beurel E - publisher: JCI Insight - date: '2017-03-23' - link: https://doi.org/10.1172/jci.insight.91782 - id: doi:10.1016/j.pnpbp.2016.08.008 title: Up-regulation of insulin-like growth factor 2 by ketamine requires glycogen synthase kinase-3 inhibition @@ -394,6 +236,37 @@ orcid: 0000-0003-4647-4917 plugin: orcid.py file: orcid.yaml +- id: doi:10.1371/journal.pcbi.1007128 + title: Open collaborative writing with Manubot + authors: + - Daniel S. Himmelstein + - Vincent Rubinetti + - David R. Slochower + - Dongbo Hu + - Venkat S. Malladi + - Casey S. Greene + - Anthony Gitter + publisher: PLOS Computational Biology + date: '2020-12-04' + link: https://doi.org/c7np + type: paper + description: Lorem ipsum _dolor_ **sit amet**, consectetur adipiscing elit, sed + do eiusmod tempor incididunt ut labore et dolore magna aliqua. + image: https://journals.plos.org/ploscompbiol/article/figure/image?size=inline&id=info:doi/10.1371/journal.pcbi.1007128.g001&rev=2 + buttons: + - type: manubot + link: https://greenelab.github.io/meta-review/ + - type: source + text: Manuscript Source + link: https://github.com/greenelab/meta-review + - type: website + link: http://manubot.org/ + tags: + - open science + - collaboration + repo: greenelab/meta-review + plugin: sources.py + file: sources.yaml - id: doi:10.1016/j.csbj.2020.05.017 title: Constructing knowledge graphs and their biomedical applications authors: