diff --git a/_cite/.cache/cache.db b/_cite/.cache/cache.db index 0459b15..f10830a 100644 Binary files a/_cite/.cache/cache.db and b/_cite/.cache/cache.db differ diff --git a/_data/citations.yaml b/_data/citations.yaml index fe0ed47..43f2990 100644 --- a/_data/citations.yaml +++ b/_data/citations.yaml @@ -1,139 +1,5 @@ # DO NOT EDIT, GENERATED AUTOMATICALLY -- id: doi:10.1016/j.cell.2024.08.019 - title: Cross-disorder and disease-specific pathways in dementia revealed by single-cell genomics - authors: - - Rexach JE - - Cheng Y - - Chen L - - Polioudakis D - - Lin LC - - Mitri V - - Elkins A - - Han X - - Yamakawa M - - Yin A - - Calini D - - Kawaguchi R - - Ou J - - Huang J - - Williams C - - Robinson J - - Gaus SE - - Spina S - - Lee EB - - Grinberg LT - - Vinters H - - Trojanowski JQ - - Seeley WW - - Malhotra D - - Geschwind DH - publisher: Cell - date: '2024-09-09' - link: https://www.cell.com/cell/abstract/S0092-8674(24)00910-3 - image: https://www.cell.com/cms/asset/atypon:cms:attachment:img:d149e6:rev:1727539174289-9392:pii:S0092867423X0021X/cover.tif.jpg -- id: doi:10.1126/science.adh26 - title: Molecular cascades and cell-type specific signatures in autism spectrum disorders revealed by single cell genomics - authors: - - Wamsley B - - Bicks L - - Cheng Y - - Kawaguchi R - - Quintero D - - Grundman J, Liu J - - Xiao S - - Hawken N - - Margolis M - - Mazariegos S - - and Geschwind DH - publisher: Science - date: '2024-05-24' - link: https://www.science.org/doi/10.1126/science.adh2602 - image: https://www.science.org/cms/asset/7faa1c53-8e2c-424c-9358-ab1f4ee2c46f/science.2024.384.issue-6698.largecover.jpg -- id: doi:10.1126/science.adi5199 - title: Single-cell genomics and regulatory networks for 388 human brains - authors: - - Emani PS - - Liu JJ - - Clarke D - - Jensen M - - Warrell J - - Gupta C - - Meng R - - Lee CY - - Xu S - - Dursun C - - Lou S - - (13 authors) - - Cheng Y - - et al. - publisher: Science - date: '2024-05-24' - link: https://www.science.org/doi/10.1126/science.adi5199 - image: https://www.science.org/cms/asset/7faa1c53-8e2c-424c-9358-ab1f4ee2c46f/science.2024.384.issue-6698.largecover.jpg -- id: doi:10.1523/JNEUROSCI.2076-22.2023 - title: Integrin-driven Axon Regeneration in the Spinal Cord Activates a Distinctive CNS Regeneration Program - authors: - - Cheah M (co-first) - - Cheng Y (co-first) - - Petrova V - - Cimpean A - - Jendelova P - - Swarup V - - Woolf CJ - - Geschwind DH - - Fawcett JW - publisher: Journal of Neuroscience (cover) - date: '2023-06-28' - link: https://pubmed.ncbi.nlm.nih.gov/37277179/ - image: https://www.jneurosci.org/sites/default/files/styles/medium/public/highwire/jneuro/43/26.cover-source.jpg -- id: doi:10.1016/j.neuron.2023.06.013 - title: The Intermittent Fasting Mimetic, 2-deoxyglucose, Reprograms Brain Derived Neurotrophic Factor (BDNF) transcription via an Adaptive ER Stress-ATF4 Pathway and Improves Outcomes in Alzheimer's and Stroke Models - authors: - - Kumar A - - Karuppagounder SS - - Chen Y - - Corona C - - Kawaguchi R - - Cheng Y - - Balkaya M - - Sagdullaev BT - - Wen Z - - Coppola G - - Stuart C - - Cho S - - Ming G - - Tuvikene J - - Timmusk T - - Geschwind DH - - Ratan RR - publisher: Neuron - date: '2023-07-11' - link: https://pubmed.ncbi.nlm.nih.gov/37453419/ - image: https://ars.els-cdn.com/content/image/1-s2.0-S0896627322X00196-cov200h.gif -- id: doi:10.1038/s41467-022-31960-7 - title: Transcription factor network analysis identifies REST/NRSF as an intrinsic regulator of CNS regeneration - authors: - - Cheng Y - - Yin Y - - Zhang A - - Bernstein AM - - Kawaguchi R - - Gao K - - Potter K - - Gilbert H - - Ao Y - - Ou J - - Fricano-Kugler CJ - - Goldberg JL - - Woolf CJ - - Sofroniew MV - - Benowitz LI - - Geschwind DH - publisher: Nature Communications - date: '2022-07-29' - link: https://doi.org/10.1038/s41467-022-31960-7 - image: https://media.springernature.com/full/springer-static/image/art%3A10.1038%2Fs41467-022-31960-7/MediaObjects/41467_2022_31960_Fig1_HTML.png - id: doi:10.1101/2022.01.20.477004 title: Core Transcription Programs Controlling Injury-Induced Neurodegeneration of Retinal Ganglion Cells @@ -161,10 +27,9 @@ - Joshua R. Sanes - Daniel H. Geschwind - Zhigang He - publisher: Neuron + publisher: Cold Spring Harbor Laboratory date: '2022-01-22' - link: https://doi.org/10.1016/j.neuron.2022.06.003 - image: https://ars.els-cdn.com/content/image/1-s2.0-S0896627321X00177-cov200h.gif + link: https://doi.org/g8j2q7 orcid: 0000-0003-4647-4917 plugin: orcid.py file: orcid.yaml @@ -180,7 +45,32 @@ publisher: Brain, Behavior, and Immunity date: '2020-10-01' link: https://doi.org/g8j2q9 - image: https://ars.els-cdn.com/content/image/1-s2.0-S0889159120X00067-cov200h.gif + orcid: 0000-0003-4647-4917 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1101/2020.12.13.413104 + title: Transcription factor network analysis identifies REST/NRSF as an intrinsic + regulator of CNS regeneration + authors: + - Yuyan Cheng + - Yuqin Yin + - Alice Zhang + - Alexander M. Bernstein + - Riki Kawaguchi + - Kun Gao + - Kyra Potter + - Hui-Ya Gilbert + - Yan Ao + - Jing Ou + - Catherine J. Fricano-Kugler + - Jeffrey L. Goldberg + - Clifford J. Woolf + - Michael V. Sofroniew + - Larry I. Benowitz + - Daniel H. Geschwind + publisher: Cold Spring Harbor Laboratory + date: '2020-12-14' + link: https://doi.org/gsz7tn orcid: 0000-0003-4647-4917 plugin: orcid.py file: orcid.yaml @@ -199,7 +89,6 @@ publisher: Neuroscience Research date: '2019-12-01' link: https://doi.org/g8j2rd - image: https://ars.els-cdn.com/content/image/1-s2.0-S0168010219X00115-cov200h.gif orcid: 0000-0003-4647-4917 plugin: orcid.py file: orcid.yaml @@ -216,7 +105,6 @@ publisher: Brain, Behavior, and Immunity date: '2018-03-01' link: https://doi.org/gdnqcz - image: https://ars.els-cdn.com/content/image/1-s2.0-S0889159118X00026-cov200h.gif orcid: 0000-0003-4647-4917 plugin: orcid.py file: orcid.yaml @@ -236,7 +124,6 @@ publisher: JCI Insight date: '2017-03-23' link: https://doi.org/gf43zp - image: https://df6sxcketz7bb.cloudfront.net/volumes/default_cover.png orcid: 0000-0003-4647-4917 plugin: orcid.py file: orcid.yaml @@ -270,7 +157,6 @@ publisher: The Journal of Neuroscience date: '2017-04-14' link: https://doi.org/g8j2rj - image: https://www.jneurosci.org/sites/default/files/styles/medium/public/highwire/jneuro/37/19.cover-source.jpg orcid: 0000-0003-4647-4917 plugin: orcid.py file: orcid.yaml @@ -286,7 +172,6 @@ publisher: Trends in Biochemical Sciences date: '2017-03-01' link: https://doi.org/f9w4xk - image: https://ars.els-cdn.com/content/image/1-s2.0-S0968000416X00047-cov200h.gif orcid: 0000-0003-4647-4917 plugin: orcid.py file: orcid.yaml @@ -302,7 +187,6 @@ publisher: Progress in Neuro-Psychopharmacology and Biological Psychiatry date: '2017-01-01' link: https://doi.org/g8j2rk - image: https://ars.els-cdn.com/content/image/1-s2.0-S0278584616X00073-cov200h.gif orcid: 0000-0003-4647-4917 plugin: orcid.py file: orcid.yaml @@ -321,7 +205,6 @@ publisher: Brain, Behavior, and Immunity date: '2016-03-01' link: https://doi.org/f8fvfk - image: https://ars.els-cdn.com/content/image/1-s2.0-S0889159116X00025-cov200h.gif orcid: 0000-0003-4647-4917 plugin: orcid.py file: orcid.yaml @@ -335,7 +218,6 @@ publisher: BMC Neuroscience date: '2015-05-07' link: https://doi.org/gb5jmd - image: https://bmcneurosci.biomedcentral.com/static/images/bmc/logos/logo-bmc-strapline-series-3725f38f29.svg orcid: 0000-0003-4647-4917 plugin: orcid.py file: orcid.yaml @@ -351,8 +233,64 @@ publisher: Pharmacology & Therapeutics date: '2014-01-01' link: https://doi.org/f5n565 - image: https://ars.els-cdn.com/content/image/1-s2.0-S0163725813X00130-cov200h.gif orcid: 0000-0003-4647-4917 plugin: orcid.py file: orcid.yaml - +- id: doi:10.1371/journal.pcbi.1007128 + title: Open collaborative writing with Manubot + authors: + - Daniel S. Himmelstein + - Vincent Rubinetti + - David R. Slochower + - Dongbo Hu + - Venkat S. Malladi + - Casey S. Greene + - Anthony Gitter + publisher: PLOS Computational Biology + date: '2020-12-04' + link: https://doi.org/c7np + type: paper + description: Lorem ipsum _dolor_ **sit amet**, consectetur adipiscing elit, sed + do eiusmod tempor incididunt ut labore et dolore magna aliqua. + image: https://journals.plos.org/ploscompbiol/article/figure/image?size=inline&id=info:doi/10.1371/journal.pcbi.1007128.g001&rev=2 + buttons: + - type: manubot + link: https://greenelab.github.io/meta-review/ + - type: source + text: Manuscript Source + link: https://github.com/greenelab/meta-review + - type: website + link: http://manubot.org/ + tags: + - open science + - collaboration + repo: greenelab/meta-review + plugin: sources.py + file: sources.yaml +- id: doi:10.1016/j.csbj.2020.05.017 + title: Constructing knowledge graphs and their biomedical applications + authors: + - David N. Nicholson + - Casey S. Greene + publisher: Computational and Structural Biotechnology Journal + date: '2020-01-01' + link: https://doi.org/gg7m48 + image: https://ars.els-cdn.com/content/image/1-s2.0-S2001037020302804-gr1.jpg + plugin: sources.py + file: sources.yaml +- id: doi:10.7554/eLife.32822 + title: Sci-Hub provides access to nearly all scholarly literature + authors: + - Daniel S Himmelstein + - Ariel Rodriguez Romero + - Jacob G Levernier + - Thomas Anthony Munro + - Stephen Reid McLaughlin + - Bastian Greshake Tzovaras + - Casey S Greene + publisher: eLife + date: '2018-03-01' + link: https://doi.org/ckcj + image: https://iiif.elifesciences.org/lax:32822%2Felife-32822-fig8-v3.tif/full/863,/0/default.webp + plugin: sources.py + file: sources.yaml