From 8951ea30d2b295ba62c8c56df61d3e79ccb1ddfd Mon Sep 17 00:00:00 2001
From: riasc <richard.schaefer@zoho.com>
Date: Sun, 17 Nov 2024 15:56:20 -0600
Subject: [PATCH] changed gzip flag to bool

---
 cli/include/FileTypeDetector.hpp | 2 +-
 cli/src/FileTypeDetector.cpp     | 5 ++---
 2 files changed, 3 insertions(+), 4 deletions(-)

diff --git a/cli/include/FileTypeDetector.hpp b/cli/include/FileTypeDetector.hpp
index cbe9c18..0834a6b 100644
--- a/cli/include/FileTypeDetector.hpp
+++ b/cli/include/FileTypeDetector.hpp
@@ -21,7 +21,7 @@ namespace genogrove {
 
     class FileTypeDetector {
         public:
-            std::tuple<FileType, std::bitset<1>> detectFileType(const std::filesystem::path& filepath);
+            std::tuple<FileType, bool> detectFileType(const std::filesystem::path& filepath);
     };
 }
 
diff --git a/cli/src/FileTypeDetector.cpp b/cli/src/FileTypeDetector.cpp
index 8fab613..2b491a8 100644
--- a/cli/src/FileTypeDetector.cpp
+++ b/cli/src/FileTypeDetector.cpp
@@ -10,15 +10,14 @@ namespace genogrove {
             {".vcf", FileType::VCF}
     };
 
-    std::tuple<FileType, std::bitset<1>> FileTypeDetector::detectFileType(const std::filesystem::path& filepath) {
+    std::tuple<FileType, bool> FileTypeDetector::detectFileType(const std::filesystem::path& filepath) {
         std::ifstream file(filepath, std::ios::binary);
         if(!file) { throw std::runtime_error("Failed to open file: " + filepath.string()); }
 
         // check if the file is gzipped
         char buffer[2];
         file.read(buffer, 2);
-        std::bitset<1> gzipped(0);
-        if(file.gcount() == 2 && buffer[0] == 0x1f && buffer[1] == 0x8b) { gzipped = std::bitset<1>(1); }
+        bool gzipped = (file.gcount() == 2 && buffer[0] == 0x1f && buffer[1] == 0x8b);
 
         // extract the file extension
         std::string extension = filepath.extension().string();