From f3c92340ec7dadabcb9eb087ed330ff0c6ed8000 Mon Sep 17 00:00:00 2001 From: riasc Date: Wed, 13 Mar 2024 13:44:50 -0500 Subject: [PATCH] added raw data to input rule when no processing is performed --- workflow/rules/common.smk | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk index 90cfcbd..5384198 100644 --- a/workflow/rules/common.smk +++ b/workflow/rules/common.smk @@ -475,9 +475,11 @@ def get_dna_align_input(wildcards): readtype=["R1", "R2"], group = wildcards.group, sample = wildcards.sample) + else: # no pre-processing + return config['data']['dnaseq'][wildcards.group] # is bamfile - else: # no pre-processing has been performed + else: # no pre-processing has been performed return config['data']['dnaseq'][wildcards.group]