diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk index 90cfcbd..5384198 100644 --- a/workflow/rules/common.smk +++ b/workflow/rules/common.smk @@ -475,9 +475,11 @@ def get_dna_align_input(wildcards): readtype=["R1", "R2"], group = wildcards.group, sample = wildcards.sample) + else: # no pre-processing + return config['data']['dnaseq'][wildcards.group] # is bamfile - else: # no pre-processing has been performed + else: # no pre-processing has been performed return config['data']['dnaseq'][wildcards.group]