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In the last step for junction annotation,
python src/statistic_annotation.py refs/gencode.v19.annotation_noHead.gtf junctionSite.txt loci1_annotation5bp+gtf.txt loci2_annotation5bp+gtf.txt
what is the "gencode.v19.annotation_noHead.gtf" file? where can we find this gtf file or is it edited?
Any help is highly appreciated!
Thanks, @Tanv1
The text was updated successfully, but these errors were encountered:
"gencode.v19.annotation_noHead.gtf" is edited from "gencode.v19.annotation.gtf" (download from GENCODE) with no first five lines information.
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In the last step for junction annotation,
python src/statistic_annotation.py refs/gencode.v19.annotation_noHead.gtf junctionSite.txt loci1_annotation5bp+gtf.txt loci2_annotation5bp+gtf.txt
what is the "gencode.v19.annotation_noHead.gtf" file?
where can we find this gtf file or is it edited?
Any help is highly appreciated!
Thanks,
@Tanv1
The text was updated successfully, but these errors were encountered: