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annotation_noHead.gtf for junction annotation #3

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Tanv1 opened this issue Feb 27, 2022 · 1 comment
Open

annotation_noHead.gtf for junction annotation #3

Tanv1 opened this issue Feb 27, 2022 · 1 comment

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@Tanv1
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Tanv1 commented Feb 27, 2022

In the last step for junction annotation,

python src/statistic_annotation.py refs/gencode.v19.annotation_noHead.gtf junctionSite.txt loci1_annotation5bp+gtf.txt loci2_annotation5bp+gtf.txt

what is the "gencode.v19.annotation_noHead.gtf" file?
where can we find this gtf file or is it edited?

Any help is highly appreciated!

Thanks,
@Tanv1

@wyt14
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wyt14 commented Apr 24, 2022

"gencode.v19.annotation_noHead.gtf" is edited from "gencode.v19.annotation.gtf" (download from GENCODE) with no first five lines information.

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