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supplemental.tex
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\documentclass[journal,transmag]{IEEEtran}
% ..........................................................................
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% ..........................................................................
% Body.
\begin{document}
\nocite{IEEEBSTcontrol}
\markboth{IEEE Transactions on Biomedical Engineering}{Standards for whole-cell modeling}
\title{Supplemental information: Toward standards for tomorrow's whole-cell models}
\author{
Dagmar Waltemath et al.
}
\maketitle
%\begin{abstract}
%Whole-cell modeling is a promising tool for biological research, bioengineering, and medicine.
%However, substantial work remains to create complete, accurate, and reproducible models.
%Among the advances needed are a strong theoretical understanding of multi-algorithm modeling, standardized modeling languages, and an efficient general-purpose simulator.
%We organized the 2015 Whole-Cell Modeling Summer School to teach whole-cell modeling, as well as to evaluate the need for new modeling standards and tools by encoding a recently published whole-cell model in SBML.
%We describe several standards extensions, software tools, and databases which are needed to facilitate reproducible whole-cell modeling, including a graphical model editor, a multi-algorithm simulator, and several SBGN extensions.
%Together these new standard extensions and software tools could accelerate whole-cell modeling.
%\end{abstract}
%\begin{IEEEkeywords}
%Whole-cell modeling, Systems biology, Computational biology, Simulation, Standards, Education
%\end{IEEEkeywords}
\IEEEpeerreviewmaketitle
\section{Table of participants}
\setcounter{table}{0}
\renewcommand{\thetable}{S\Roman{table}}
\begin{table*}[ht!]
\caption{2015 Whole-Cell Modeling Summer School participants.}
\begin{tabularx}{\textwidth}{llX}
\toprule
\textbf{Group} & \textbf{Participant} & \textbf{Affiliation}\\
\midrule
Cytokinesis & Naveen Kumar Aranganathan & European Bioinformatics Institute , UK\\
& Daniel Priego-Espinosa & National Autonomous University of Mexico, Mexico\\
& Ilya Kiselev & Siberian Branch of the Russian Academy of Sciences Novosibirsk, Russia\\
& Wolfram Liebermeister & Charit\'e Medical University of Berlin, Germany\\
& Yan Zhu & Monash University, Australia\\
\midrule
DNA repair & Arne Bittig & University of Rostock, Germany\\
& Vijayalakshmi Chelliah & European Bioinformatics Institute, UK\\
& Audald Lloret-Vilas & European Bioinformatics Institute, UK\\
& Mahesh Sharma & National Institute of Pharmaceutical Education and Research, India\\
& Namrata Tomar & Friedrich-Alexander University of Erlangen-N\"urnberg, Germany\\
\midrule
Metabolism & Kambiz Baghalian & University of Oxford, UK\\
& Frank T. Bergmann & University of Heidelberg, Germany\\
& Rafael Sousa Costa & University of Lisbon, Portugal\\
& Matthias K\"onig & Charit\'e Medical University of Berlin, Germany\\
& Kieran Smallbone & University of Manchester, UK\\
& Milenko Tokic & Swiss Federal Institute of Technology in Lausanne, Switzerland\\
\midrule
Protein & Begum Alaybeyoglu & Bo\v{g}azi\c{c}i University, Turkey\\
& Matteo Cantarelli & OpenWorm, UK\\
& Yin Hoon Chew & University of Edinburgh, UK\\
& Marcus Krantz & Humboldt University of Berlin, Germany\\
& Daewon Lee & Korea Advanced Institute of Science and Technology, Republic of Korea\\
\midrule
Replication & Vincent Knight-Schrijver & Babraham Institute, UK\\
& Je-Hoon Song & Korea Advanced Institute of Science and Technology, Republic of Korea\\
& Jannis Uhlendorf & Humboldt University of Berlin, Germany\\
& Dagmar Waltemath & University of Rostock, Germany\\
& James T. Yurkovich & University of California, San Diego, USA\\
& Anna Zhukova & National Center for Scientific Research and University of Bordeaux, France\\
\midrule
Replication initiation & Harold F. Gomez & Boston University, USA\\
& Jens Hahn & Humboldt University of Berlin, Germany\\
& Michael Hucka & California Institute of Technology, USA\\
& Nikita Mandrik & Siberian Branch of the Russian Academy of Sciences Novosibirsk, Russia\\
& Martin Scharm & University of Rostock, Germany\\
& Florian Wendland & University of Rostock, Germany\\
\midrule
RNA & Tuure Hameri & Swiss Federal Institute of Technology in Lausanne, Switzerland\\
& J. Kyle Medley & University of Washington, USA\\
& Sucheendra Kumar Palaniappan & Institute for Research in Computer Science and Automation, France\\
& Pinar Pir & Babraham Institute, UK\\
& Natalie Stanford & University of Manchester, UK\\
& Markus Wolfien & University of Rostock, Germany\\
\midrule
Translation & Joseph Cursons & University of Melbourne, Australia\\
& Daniel Hernandez & Swiss Federal Institute of Technology in Lausanne, Switzerland\\
& Denis Kazakiewicz & University of Hasselt, Belgium and Medical University of Bia\l{}ystok, Poland\\
& Pedro Mendes & University of Manchester, UK\\
& Hojjat Naderi Meshkin & Academic Center for Education, Culture and Research, Iran\\
\midrule
Integration & Paulo Eduardo Pinto Burke & Federal University of S\~ao Paulo, Brazil\\
& Tobias Czauderna & Monash University, Australia\\
& Bertrand Moreau & CoSMo Company, France\\
& Chris J. Myers & University of Utah, USA\\
& Thawfeek Mohamed Varusai & University College Dublin, Ireland\\
& Argyris Zardilis & University of Edinburgh, UK\\
\midrule
Annotation, documentation & Christian Kn\"upfer & University of Jena, Germany\\
and visualization & Falk Schreiber & Monash University, Australia\\
& Tom Theile & University of Rostock, Germany\\
\midrule
Modeling instructor & Jonathan R. Karr & Icahn School of Medicine at Mount Sinai, USA\\
\bottomrule
\end{tabularx}
\end{table*}
\end{document}