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Use the model to predict TFBS #1

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malereku opened this issue Jan 30, 2023 · 0 comments
Open

Use the model to predict TFBS #1

malereku opened this issue Jan 30, 2023 · 0 comments

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@malereku
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Hi, I would like to use a script inference.py to predict transcription factor binding sites in given sequences. I would like to use the model you published for this purpose (trained_model_101_seqs.pkl).

Can you provide more details on how to run a script? For example, I don't know where to get the Gmean_threshold_b.txt file mentioned in the 132nd line of code (I can't find it in the files provided). Can you share this file as well?

It is also not clear to me how to generate the resulting file. Can you tell what I should expect?

I am very sorry if my questions are very basic, I am just learning. I would appreciate your help.

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