diff --git a/setup.cfg b/setup.cfg index eda287e..76bf66d 100644 --- a/setup.cfg +++ b/setup.cfg @@ -32,8 +32,8 @@ install_requires = chardet lightning kornia>=0.7.0 - torch - torchvision + # torch + # torchvision lz4 imagecodecs>=2023.7.10 wandb diff --git a/trackastra/data/example_data.py b/trackastra/data/example_data.py index bd099d0..999e50d 100644 --- a/trackastra/data/example_data.py +++ b/trackastra/data/example_data.py @@ -8,8 +8,9 @@ def example_data_bacteria(): """Bacteria images and masks from. - Van Vliet et al. Local interactions lead to spatially correlated gene expression levels in bacterial group (2018) - + Van Vliet et al. Spatially Correlated Gene Expression in Bacterial Groups: The Role of Lineage History, Spatial Gradients, and Cell-Cell Interactions (2018) + https://doi.org/10.1016/j.cels.2018.03.009 + subset of timelapse trpL/150310-11 """ img = tifffile.imread(root / "trpL_150310-11_img.tif")