Logging at level: debug GitHub Pages: github-pages v232 GitHub Pages: jekyll v3.10.0 Theme: jekyll-theme-primer Theme source: /usr/local/bundle/gems/jekyll-theme-primer-0.6.0 Requiring: jekyll-github-metadata Requiring: jekyll-seo-tag Requiring: jekyll-coffeescript Requiring: jekyll-commonmark-ghpages Requiring: jekyll-gist Requiring: jekyll-github-metadata Requiring: jekyll-paginate Requiring: jekyll-relative-links Requiring: jekyll-optional-front-matter Requiring: jekyll-readme-index Requiring: jekyll-default-layout Requiring: jekyll-titles-from-headings GitHub Metadata: Initializing... Source: /github/workspace/. Destination: /github/workspace/./_site Incremental build: disabled. Enable with --incremental Generating... Generating: JekyllOptionalFrontMatter::Generator finished in 0.000950422 seconds. Generating: JekyllReadmeIndex::Generator finished in 0.004799686 seconds. Generating: Jekyll::Paginate::Pagination finished in 4.769e-06 seconds. GitHub Metadata: Generating for weecology/TreeSegmentation GitHub Metadata: Calling @client.pages("weecology/TreeSegmentation", {}) Generating: JekyllRelativeLinks::Generator finished in 0.277574654 seconds. Generating: JekyllDefaultLayout::Generator finished in 0.000200083 seconds. Requiring: kramdown-parser-gfm Generating: JekyllTitlesFromHeadings::Generator finished in 0.007713136 seconds. Rendering: analysis/DataExploration.Rmd Pre-Render Hooks: analysis/DataExploration.Rmd Rendering Markup: analysis/DataExploration.Rmd Rendering Layout: analysis/DataExploration.Rmd Rendering: analysis/Evaluate.Rmd Pre-Render Hooks: analysis/Evaluate.Rmd Rendering Markup: analysis/Evaluate.Rmd Rendering Layout: analysis/Evaluate.Rmd Rendering: data/NeonTreeEvaluation/utilities/ExampleR.Rmd Pre-Render Hooks: data/NeonTreeEvaluation/utilities/ExampleR.Rmd Rendering Markup: data/NeonTreeEvaluation/utilities/ExampleR.Rmd Rendering Layout: data/NeonTreeEvaluation/utilities/ExampleR.Rmd Rendering: data/NeonTreeEvaluation/utilities/ExampleR.md Pre-Render Hooks: data/NeonTreeEvaluation/utilities/ExampleR.md Rendering Markup: data/NeonTreeEvaluation/utilities/ExampleR.md Rendering Layout: data/NeonTreeEvaluation/utilities/ExampleR.md Layout source: theme GitHub Metadata: Calling @client.repository("weecology/TreeSegmentation", {:accept=>"application/vnd.github.drax-preview+json"}) Rendering: analysis/ExtractTrees.Rmd Pre-Render Hooks: analysis/ExtractTrees.Rmd Rendering Markup: analysis/ExtractTrees.Rmd Rendering Layout: analysis/ExtractTrees.Rmd Rendering: analysis/Lidar.Rmd Pre-Render Hooks: analysis/Lidar.Rmd Rendering Markup: analysis/Lidar.Rmd Rendering Layout: analysis/Lidar.Rmd Rendering: analysis/NEON_samples.Rmd Pre-Render Hooks: analysis/NEON_samples.Rmd Rendering Markup: analysis/NEON_samples.Rmd Rendering Layout: analysis/NEON_samples.Rmd Rendering: analysis/NeonRecall.Rmd Pre-Render Hooks: analysis/NeonRecall.Rmd Rendering Markup: analysis/NeonRecall.Rmd Rendering Layout: analysis/NeonRecall.Rmd Rendering: analysis/PR_allsites.Rmd Pre-Render Hooks: analysis/PR_allsites.Rmd Rendering Markup: analysis/PR_allsites.Rmd Rendering Layout: analysis/PR_allsites.Rmd Rendering: analysis/TreeCount.Rmd Pre-Render Hooks: analysis/TreeCount.Rmd Rendering Markup: analysis/TreeCount.Rmd Rendering Layout: analysis/TreeCount.Rmd Rendering: analysis/overlapCompetition.Rmd Pre-Render Hooks: analysis/overlapCompetition.Rmd Rendering Markup: analysis/overlapCompetition.Rmd Rendering Layout: analysis/overlapCompetition.Rmd Rendering: analysis/overlapCompetition.md Pre-Render Hooks: analysis/overlapCompetition.md Rendering Markup: analysis/overlapCompetition.md Rendering Layout: analysis/overlapCompetition.md Layout source: theme