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NanoPlot crashed #391

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bioblueliu opened this issue Dec 10, 2024 · 0 comments
Closed

NanoPlot crashed #391

bioblueliu opened this issue Dec 10, 2024 · 0 comments

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@bioblueliu
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Hi Wouter,

I installed nanoplot by 'conda -c bioconda nanoplot' on the server . This comand installed v1.32,. it crashed when I run the software. so I replace 5 files with the newest version on https://github.com/wdecoster/NanoPlot/tree/master/nanoplot, as shown. But it still crashed.

NanoPlot.py ---------- fix for barcoded stats as reported in #384 --------- --------------------------- 2 months ago
filteroptions.py--------exit early when no reads are left after filtering ------------------ ------------ last year
report.py -------------modified legacy option, kde plots fixed figure size, css styling of l… -----------3 years ago
utils.py ------------- --only-report option added (#346) ----------------------------------- ------- last year
version.py -----------fix for #376 ------------------------------------------------------------------------- 2 months ago

Following is the content of the log file:

If you read this then NanoPlot 1.44.0 has crashed :-(
Please try updating NanoPlot and see if that helps...

If not, please report this issue at https://github.com/wdecoster/NanoPlot/issues
If you could include the log file that would be really helpful.
Thanks!

Traceback (most recent call last):
File "/home/liuzhb/.conda/envs/lzb_env/bin/NanoPlot", line 10, in
sys.exit(main())
File "/home/liuzhb/.conda/envs/lzb_env/lib/python3.7/site-packages/nanoplot/NanoPlot.py", line 110, in main
plots = make_plots(datadf, settings)
File "/home/liuzhb/.conda/envs/lzb_env/lib/python3.7/site-packages/nanoplot/NanoPlot.py", line 173, in make_plots
settings=settings,
TypeError: length_plots() got an unexpected keyword argument 'settings'

I would appreciate your help. Thank you for your time and support.

Best regards,

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