From 7be4911e3329ca3f08d9bcb66b091975a2659a31 Mon Sep 17 00:00:00 2001
From: Fatih Karaoglanoglu <fatihkaraoglanoglu@gmail.com>
Date: Wed, 27 May 2020 14:30:41 -0700
Subject: [PATCH] Small example updated, typo fixes

---
 README.md | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/README.md b/README.md
index 8529396..2f692c3 100644
--- a/README.md
+++ b/README.md
@@ -96,7 +96,7 @@ input:
  "samplename1":
   - A.cram
  "samplename2":
-  - B.cram/bam
+  - B.bam
 ```
 
 Now, to run pamir on such a config file, you have to run the following command.
@@ -118,7 +118,7 @@ Pamir generates a [VCF file](https://samtools.github.io/hts-specs/VCFv4.2.pdf) f
 [path]/
 ├── raw-data                       -> OR [raw-data]
 │   ├── A.cram
-│   ├── B.cram
+│   ├── B.bam
 ├── analysis                       -> OR [analysis-base]
 │   └── my-pop
 └── results                        -> OR [results-base]
@@ -144,7 +144,7 @@ Pamir generates a [VCF file](https://samtools.github.io/hts-specs/VCFv4.2.pdf) f
 
 # Example
 ```shell
-curl -L https://ndownloader.figshare.com/files/20021672?private_link=ce133e9aaa4d38a6d6b0 --output example.tar.gz
+curl -L https://ndownloader.figshare.com/files/22813901 --output example.tar.gz
 tar xzvf example.tar.gz
 cd example; ./configure.sh
 pamir.sh -j16 --configfile config.yaml